Variant report

Variant	rs7795059
Chromosome Location	chr7:97890297-97890298
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:97890127..97891931-chr7:97894031..97896338,2	MCF-7	breast:
2	chr7:97813734..97816516-chr7:97889057..97891236,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10245235	0.81[AFR][1000 genomes]
rs10953249	0.80[AFR][1000 genomes]
rs4604367	0.81[AFR][1000 genomes]
rs7778082	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3500384	chr7:97527787-98015382	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	esv3500386	chr7:97527787-98015382	Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1017481	chr7:97597641-98041043	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv539031	chr7:97597641-98041043	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1019531	chr7:97653880-98034129	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv539032	chr7:97653880-98034129	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv831066	chr7:97726879-97890550	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1033029	chr7:97773232-98017992	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv539033	chr7:97773232-98017992	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv888760	chr7:97816327-97965016	Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	nsv831067	chr7:97860169-98065528	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
13	nsv1026477	chr7:97869446-98034129	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97882200-97893200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:97882400-97890800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:97882400-97894400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:97882400-97895200	Weak transcription	NHDF-Ad	bronchial
5	chr7:97882400-97895400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:97882600-97892400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:97882600-97892800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:97882600-97893000	Weak transcription	Brain Germinal Matrix	brain
9	chr7:97882800-97895000	Weak transcription	HUVEC	blood vessel
10	chr7:97882800-97895200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:97882800-97895200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:97882800-97895200	Weak transcription	NH-A	brain
13	chr7:97882800-97895200	Weak transcription	NHLF	lung
14	chr7:97883000-97890800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:97883000-97890800	Weak transcription	A549	lung
16	chr7:97883000-97893000	Weak transcription	Stomach Mucosa	stomach
17	chr7:97883000-97893400	Weak transcription	Colonic Mucosa	Colon
18	chr7:97883000-97894800	Weak transcription	Fetal Brain Male	brain
19	chr7:97884600-97891000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:97884600-97894400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr7:97885600-97891400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:97886000-97891600	Strong transcription	Fetal Intestine Small	intestine
23	chr7:97886600-97890600	Weak transcription	Aorta	Aorta
24	chr7:97886600-97890600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:97886600-97895200	Weak transcription	HepG2	liver
26	chr7:97886600-97896600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr7:97886600-97909800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr7:97886800-97890600	Weak transcription	Dnd41	blood
29	chr7:97886800-97890800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:97886800-97909200	Weak transcription	Brain Substantia Nigra	brain
31	chr7:97886800-97910000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr7:97887200-97890400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr7:97887200-97890800	Weak transcription	Placenta	Placenta
34	chr7:97887200-97910000	Weak transcription	Right Ventricle	heart
35	chr7:97887400-97890600	Weak transcription	Primary T cells from cord blood	blood
36	chr7:97887400-97890600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr7:97887400-97890600	Weak transcription	Fetal Thymus	thymus
38	chr7:97887400-97890800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr7:97887400-97890800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:97887400-97890800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr7:97887400-97894800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr7:97887400-97895200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr7:97887400-97896400	Weak transcription	Ovary	ovary
44	chr7:97887400-97897200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr7:97887400-97897200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr7:97887400-97900800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr7:97887400-97908000	Weak transcription	Gastric	stomach
48	chr7:97887400-97910000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr7:97887600-97905800	Weak transcription	Left Ventricle	heart
50	chr7:97887600-97909600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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