Variant report

Variant	rs7795108
Chromosome Location	chr7:66506629-66506630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66506194..66508281-chr7:66765871..66767933,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067601	Chromatin interaction
ENSG00000106610	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10252707	0.90[ASN][1000 genomes]
rs10950057	0.92[ASN][1000 genomes]
rs11763729	0.91[ASN][1000 genomes]
rs11766621	0.81[ASN][1000 genomes]
rs11771519	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4146599	0.93[ASN][1000 genomes]
rs4236210	0.91[ASN][1000 genomes]
rs4626481	0.91[ASN][1000 genomes]
rs4718441	0.83[ASN][1000 genomes]
rs4718442	0.81[ASN][1000 genomes]
rs4718443	0.89[ASN][1000 genomes]
rs58361003	0.92[ASN][1000 genomes]
rs58895217	0.86[ASN][1000 genomes]
rs7790453	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv1032575	chr7:66432853-66576034	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv981515	chr7:66477535-66532313	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv824151	chr7:66494072-66508524	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv33653	chr7:66494301-66508342	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7795108	TYW1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66462400-66508000	Weak transcription	Stomach Mucosa	stomach
2	chr7:66463000-66507800	Weak transcription	Fetal Brain Male	brain
3	chr7:66463200-66510000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:66483400-66551200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:66483600-66534400	Weak transcription	Aorta	Aorta
6	chr7:66486400-66531600	Weak transcription	Ovary	ovary
7	chr7:66486600-66507600	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:66487000-66515800	Weak transcription	Fetal Brain Female	brain
9	chr7:66487000-66576600	Weak transcription	Gastric	stomach
10	chr7:66487800-66508600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:66488000-66508600	Weak transcription	Fetal Lung	lung
12	chr7:66488000-66511800	Weak transcription	HepG2	liver
13	chr7:66491000-66507600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:66495000-66532200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:66495200-66507400	Weak transcription	A549	lung
16	chr7:66495200-66507800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:66495200-66507800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:66495200-66508000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:66495200-66508000	Weak transcription	NH-A	brain
20	chr7:66495200-66510600	Weak transcription	Primary B cells from cord blood	blood
21	chr7:66495200-66515400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:66495200-66515800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr7:66495200-66516400	Weak transcription	Primary T cells from cord blood	blood
24	chr7:66495200-66516600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr7:66495200-66523000	Weak transcription	Esophagus	oesophagus
26	chr7:66495200-66523600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:66495200-66538000	Weak transcription	Brain Germinal Matrix	brain
28	chr7:66495200-66539400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr7:66495200-66597200	Weak transcription	Right Ventricle	heart
30	chr7:66495400-66507000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr7:66495400-66507600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:66495400-66507800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr7:66495400-66507800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:66495400-66507800	Weak transcription	K562	blood
35	chr7:66495400-66508000	Weak transcription	Liver	Liver
36	chr7:66495400-66508000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr7:66495400-66508000	Weak transcription	GM12878-XiMat	blood
38	chr7:66495400-66510000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:66495400-66510600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr7:66495400-66513600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr7:66495400-66515800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr7:66495400-66529600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:66495400-66531800	Weak transcription	Fetal Kidney	kidney
44	chr7:66495400-66533200	Weak transcription	Thymus	Thymus
45	chr7:66495400-66534400	Weak transcription	Spleen	Spleen
46	chr7:66495600-66532200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr7:66495600-66533200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr7:66495600-66547400	Weak transcription	Pancreas	Pancrea
49	chr7:66495800-66516400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr7:66498600-66507800	Weak transcription	Adipose Nuclei	Adipose

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