Variant report

Variant	rs7795274
Chromosome Location	chr7:107268495-107268496
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107265932..107268646-chr7:107401473..107403463,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17481842	1.00[YRI][hapmap]
rs6949860	1.00[YRI][hapmap]
rs6969031	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107221200-107272000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:107221400-107272400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:107221400-107276000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:107235200-107271800	Weak transcription	Small Intestine	intestine
5	chr7:107236000-107270800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:107238000-107272000	Weak transcription	Esophagus	oesophagus
7	chr7:107255400-107271600	Weak transcription	Pancreas	Pancrea
8	chr7:107255600-107271600	Weak transcription	Brain Substantia Nigra	brain
9	chr7:107255600-107272000	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:107256200-107269600	Weak transcription	Brain Angular Gyrus	brain
11	chr7:107256400-107272800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr7:107256800-107268800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:107256800-107269000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:107256800-107271600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr7:107256800-107278600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:107257000-107269200	Weak transcription	Brain Germinal Matrix	brain
17	chr7:107257400-107268600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr7:107257800-107270600	Weak transcription	Brain Anterior Caudate	brain
19	chr7:107257800-107271000	Weak transcription	A549	lung
20	chr7:107258200-107271800	Weak transcription	Fetal Brain Male	brain
21	chr7:107258800-107272800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:107259400-107269000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:107261600-107269200	Weak transcription	Right Ventricle	heart
24	chr7:107261600-107272000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:107261600-107273800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr7:107262200-107272200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr7:107262400-107271000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:107262400-107271200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:107262600-107269600	Weak transcription	Ovary	ovary
30	chr7:107262800-107269200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr7:107262800-107269400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr7:107263000-107268600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr7:107263000-107268800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:107263000-107269800	Weak transcription	Colon Smooth Muscle	Colon
35	chr7:107263000-107270000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:107263000-107273800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr7:107263200-107269200	Weak transcription	Fetal Brain Female	brain
38	chr7:107263200-107271200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr7:107263400-107268800	Weak transcription	NHLF	lung
40	chr7:107263400-107269600	Weak transcription	Fetal Intestine Small	intestine
41	chr7:107263400-107269600	Weak transcription	Spleen	Spleen
42	chr7:107263400-107272200	Weak transcription	Fetal Heart	heart
43	chr7:107263400-107272800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr7:107263600-107268800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr7:107263600-107268800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr7:107263600-107268800	Weak transcription	Gastric	stomach
47	chr7:107263600-107268800	Weak transcription	Lung	lung
48	chr7:107263600-107269000	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr7:107263600-107269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr7:107263600-107269200	Weak transcription	Aorta	Aorta

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