Variant report

Variant	rs7795554
Chromosome Location	chr7:12192744-12192745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10214993	0.87[ASN][1000 genomes]
rs10230634	0.95[ASN][1000 genomes]
rs10242902	0.85[ASN][1000 genomes]
rs10247990	0.95[ASN][1000 genomes]
rs10254924	0.95[ASN][1000 genomes]
rs10257938	0.82[ASN][1000 genomes]
rs13236593	0.95[EUR][1000 genomes]
rs1369492	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1369493	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1435540	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1595014	0.92[ASN][1000 genomes]
rs17593950	0.95[ASN][1000 genomes]
rs1990599	0.92[ASN][1000 genomes]
rs2356058	0.90[ASN][1000 genomes]
rs2356059	0.92[ASN][1000 genomes]
rs28805088	0.82[ASN][1000 genomes]
rs4721051	0.95[ASN][1000 genomes]
rs55757340	0.82[ASN][1000 genomes]
rs58648544	0.92[ASN][1000 genomes]
rs6460888	0.82[ASN][1000 genomes]
rs6460889	0.82[ASN][1000 genomes]
rs6962780	0.83[EUR][1000 genomes]
rs714759	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73057646	0.95[ASN][1000 genomes]
rs73057649	0.95[ASN][1000 genomes]
rs7455975	0.82[EUR][1000 genomes]
rs7776528	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7776686	0.88[EUR][1000 genomes]
rs7779920	0.82[ASN][1000 genomes]
rs7799757	0.82[ASN][1000 genomes]
rs7799943	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1021710	chr7:12164993-12251790	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
6	nsv887627	chr7:12178793-12227892	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv887628	chr7:12186502-12227892	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12191400-12192800	Enhancers	Fetal Intestine Large	intestine
2	chr7:12192000-12192800	Enhancers	Fetal Intestine Small	intestine

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