Variant report

Variant	rs7795959
Chromosome Location	chr7:151076574-151076575
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:151075872..151078057-chr7:151144415..151146054,2	MCF-7	breast:
2	chr7:151074970..151076723-chr7:151078624..151081046,2	K562	blood:
3	chr7:151056985..151058690-chr7:151075482..151077210,2	K562	blood:
4	chr7:151076539..151080884-chr7:151119951..151124018,3	K562	blood:
5	chr7:151075761..151078225-chr7:151078438..151081089,3	K562	blood:
6	chr7:151073534..151076612-chr7:151076693..151079201,3	MCF-7	breast:
7	chr7:151070295..151074427-chr7:151076318..151079969,6	K562	blood:

Variant related genes	Relation type
ENSG00000013374	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10952308	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2159158	0.81[JPT][hapmap]
rs2240628	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6952675	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7778047	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889489	chr7:151064872-151115691	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs7795959	ZNF282	cis	cerebellum	SCAN
rs7795959	TMEM176A	cis	cerebellum	SCAN
rs7795959	ZNF767	cis	parietal	SCAN
rs7795959	NUB1	Cis_1M	lymphoblastoid	RTeQTL
rs7795959	TMEM176B	cis	cerebellum	SCAN
rs7795959	ASB10	cis	parietal	SCAN
rs7795959	TMEM176B	cis	parietal	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151049400-151077000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:151049400-151078000	Weak transcription	Stomach Mucosa	stomach
3	chr7:151059800-151078000	Weak transcription	HUVEC	blood vessel
4	chr7:151062400-151076600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:151063400-151078400	Weak transcription	Right Atrium	heart
6	chr7:151064400-151077800	Strong transcription	Fetal Intestine Large	intestine
7	chr7:151065600-151077000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:151065600-151077000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr7:151065600-151077200	Strong transcription	Fetal Stomach	stomach
10	chr7:151065600-151077400	Strong transcription	Stomach Smooth Muscle	stomach
11	chr7:151065600-151077800	Weak transcription	NHDF-Ad	bronchial
12	chr7:151065600-151078000	Strong transcription	Fetal Intestine Small	intestine
13	chr7:151065600-151078200	Weak transcription	NH-A	brain
14	chr7:151065800-151076800	Strong transcription	Liver	Liver
15	chr7:151065800-151078800	Weak transcription	Fetal Heart	heart
16	chr7:151065800-151080800	Weak transcription	HMEC	breast
17	chr7:151066000-151076800	Strong transcription	Fetal Thymus	thymus
18	chr7:151066000-151077000	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr7:151066000-151077200	Strong transcription	Thymus	Thymus
20	chr7:151066000-151077200	Strong transcription	Dnd41	blood
21	chr7:151066000-151077400	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr7:151066000-151078200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr7:151066000-151083200	Weak transcription	Hela-S3	cervix
24	chr7:151066400-151076800	Strong transcription	Primary T cells from cord blood	blood
25	chr7:151066400-151077600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:151066400-151077600	Strong transcription	Adipose Nuclei	Adipose
27	chr7:151068000-151076600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr7:151068000-151077000	Strong transcription	Lung	lung
29	chr7:151068200-151077600	Strong transcription	Fetal Brain Female	brain
30	chr7:151068400-151077800	Strong transcription	Right Ventricle	heart
31	chr7:151068600-151077200	Strong transcription	Aorta	Aorta
32	chr7:151069000-151076800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr7:151069200-151078000	Strong transcription	Brain Germinal Matrix	brain
34	chr7:151069600-151077000	Strong transcription	Brain Cingulate Gyrus	brain
35	chr7:151069600-151077000	Strong transcription	Gastric	stomach
36	chr7:151069600-151077200	Strong transcription	Pancreas	Pancrea
37	chr7:151069600-151077200	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr7:151070200-151077800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr7:151070400-151076800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr7:151070400-151076800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:151070600-151076800	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr7:151070600-151077400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:151070600-151078000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:151070800-151077600	Strong transcription	Brain Angular Gyrus	brain
45	chr7:151071000-151077000	Strong transcription	Brain Hippocampus Middle	brain
46	chr7:151071000-151078200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr7:151071200-151076600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr7:151071400-151077000	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr7:151071800-151077000	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr7:151072000-151077000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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