Variant report

Variant	rs7796173
Chromosome Location	chr7:70176751-70176752
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70175580..70177405-chr7:70179545..70181681,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1983486	0.94[CHB][hapmap]
rs2178045	0.88[CHB][hapmap]
rs35853332	0.97[ASN][1000 genomes]
rs4073117	0.86[ASN][1000 genomes]
rs55782022	0.92[ASN][1000 genomes]
rs60578070	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7784801	0.92[ASN][1000 genomes]
rs7807160	0.89[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv532783	chr7:69939570-70245396	Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3341834	chr7:69968031-70288098	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv532784	chr7:69969631-70204548	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1032378	chr7:70010392-70190353	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538929	chr7:70010392-70190353	Bivalent/Poised TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1024498	chr7:70016323-70190353	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv538930	chr7:70016323-70190353	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1025164	chr7:70061655-70469358	Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv538931	chr7:70061655-70469358	Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1029757	chr7:70061656-70190100	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538932	chr7:70061656-70190100	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1030496	chr7:70067475-70221743	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1017876	chr7:70073764-70434599	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
16	nsv1031761	chr7:70125949-70182744	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv538933	chr7:70125949-70182744	Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1022747	chr7:70169254-70301285	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	esv1834837	chr7:70171159-70202993	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv1839975	chr7:70171159-70202993	Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7796173	WBSCR22	cis	parietal	SCAN
rs7796173	ABHD11	cis	parietal	SCAN
rs7796173	TYW1	cis	parietal	SCAN

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70161400-70178000	Weak transcription	Lung	lung
2	chr7:70161800-70191200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr7:70162200-70201600	Weak transcription	Primary B cells from cord blood	blood
4	chr7:70165600-70178000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:70166400-70182400	Weak transcription	Thymus	Thymus
6	chr7:70167400-70179400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:70170400-70178000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:70171600-70177200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:70172600-70182600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:70173200-70179400	Weak transcription	Aorta	Aorta
11	chr7:70174000-70176800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr7:70174200-70176800	Enhancers	Fetal Muscle Leg	muscle
13	chr7:70174200-70177200	Enhancers	Fetal Brain Male	brain
14	chr7:70174400-70176800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:70174400-70177200	Enhancers	Fetal Heart	heart
16	chr7:70174600-70176800	Enhancers	Fetal Muscle Trunk	muscle
17	chr7:70174600-70176800	Flanking Active TSS	NHEK	skin
18	chr7:70174600-70178600	Enhancers	Liver	Liver
19	chr7:70174800-70176800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:70174800-70176800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:70174800-70176800	Genic enhancers	HUES64 Cell Line	embryonic stem cell
22	chr7:70174800-70178200	Strong transcription	Dnd41	blood
23	chr7:70175000-70178600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:70175000-70179600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:70175000-70180200	Weak transcription	Primary T cells from cord blood	blood
26	chr7:70175200-70178000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr7:70175400-70176800	Enhancers	Right Atrium	heart
28	chr7:70175400-70178000	Weak transcription	Fetal Intestine Small	intestine
29	chr7:70175400-70178200	Enhancers	Placenta Amnion	Placenta Amnion
30	chr7:70175400-70178800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr7:70175400-70179400	Weak transcription	Fetal Lung	lung
32	chr7:70175600-70177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:70175600-70177800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr7:70175600-70179400	Weak transcription	Brain Angular Gyrus	brain
35	chr7:70175600-70183800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr7:70175800-70178000	Enhancers	Esophagus	oesophagus
37	chr7:70175800-70179400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr7:70176000-70176800	Genic enhancers	H1 Cell Line	embryonic stem cell
39	chr7:70176000-70176800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:70176000-70176800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:70176000-70176800	Strong transcription	Fetal Stomach	stomach
42	chr7:70176000-70176800	Enhancers	Gastric	stomach
43	chr7:70176000-70176800	Enhancers	Left Ventricle	heart
44	chr7:70176000-70177600	Weak transcription	Fetal Brain Female	brain
45	chr7:70176000-70177800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:70176000-70178000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:70176000-70179000	Enhancers	Pancreas	Pancrea
48	chr7:70176000-70179600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr7:70176000-70179600	Weak transcription	Brain Anterior Caudate	brain
50	chr7:70176000-70179800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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