Variant report

Variant	rs7796520
Chromosome Location	chr7:27567462-27567463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1015265	0.80[AMR][1000 genomes]
rs12673949	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1404282	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1524529	0.83[AMR][1000 genomes]
rs1608663	0.83[AMR][1000 genomes]
rs1980330	0.83[AMR][1000 genomes]
rs2041715	0.83[AMR][1000 genomes]
rs6462033	0.83[AMR][1000 genomes]
rs7786973	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9639559	0.83[AMR][1000 genomes]
rs974883	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7796520	HIBADH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27552600-27568200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:27553200-27581000	Weak transcription	Fetal Heart	heart
3	chr7:27555000-27568600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:27555800-27581000	Weak transcription	Gastric	stomach
5	chr7:27556000-27579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:27556000-27581600	Weak transcription	HMEC	breast
7	chr7:27556400-27584400	Weak transcription	NHEK	skin
8	chr7:27556400-27586400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:27556600-27568400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:27556600-27569000	Weak transcription	NHDF-Ad	bronchial
11	chr7:27556800-27568800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:27557200-27573400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:27558000-27579800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:27558600-27568200	Weak transcription	Right Ventricle	heart
15	chr7:27559400-27584200	Weak transcription	Pancreas	Pancrea
16	chr7:27559400-27627800	Weak transcription	Psoas Muscle	Psoas
17	chr7:27559800-27593000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:27560800-27578800	Weak transcription	NHLF	lung
19	chr7:27561200-27568400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:27561200-27580200	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:27561200-27580600	Strong transcription	Liver	Liver
22	chr7:27561400-27568200	Weak transcription	Fetal Brain Male	brain
23	chr7:27561600-27583000	Weak transcription	Colonic Mucosa	Colon
24	chr7:27561800-27568400	Weak transcription	HSMMtube	muscle
25	chr7:27561800-27580200	Weak transcription	Fetal Stomach	stomach
26	chr7:27562400-27568600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr7:27562400-27579800	Weak transcription	NH-A	brain
28	chr7:27562400-27581000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:27562400-27581000	Weak transcription	Spleen	Spleen
30	chr7:27562600-27568800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr7:27563000-27580000	Weak transcription	Fetal Thymus	thymus
32	chr7:27563000-27581000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr7:27563200-27579800	Weak transcription	Brain Angular Gyrus	brain
34	chr7:27563400-27568200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr7:27563400-27569200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:27563400-27580800	Weak transcription	GM12878-XiMat	blood
37	chr7:27563400-27581800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr7:27563600-27571000	Strong transcription	Primary T cells from cord blood	blood
39	chr7:27563800-27569800	Strong transcription	Dnd41	blood
40	chr7:27563800-27571000	Strong transcription	A549	lung
41	chr7:27563800-27571200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr7:27564000-27568600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr7:27564000-27569800	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr7:27564000-27571000	Strong transcription	Duodenum Mucosa	Duodenum
45	chr7:27564000-27573200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr7:27564000-27580800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr7:27564200-27568000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr7:27564200-27568400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:27564200-27582000	Weak transcription	Stomach Mucosa	stomach
50	chr7:27564200-27585400	Weak transcription	Small Intestine	intestine

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