Variant report

Variant	rs7796576
Chromosome Location	chr7:138354386-138354387
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1015343	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11770967	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.89[TSI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11771094	0.87[TSI][hapmap]
rs17160449	0.92[CEU][hapmap];0.86[GIH][hapmap];0.81[EUR][1000 genomes]
rs28601695	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809600	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7796576	TBXAS1	cis	parietal	SCAN
rs7796576	ZC3HAV1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138349800-138355000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:138350200-138354800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:138351000-138354600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:138351800-138358200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:138351800-138369200	Weak transcription	Hela-S3	cervix
6	chr7:138352600-138354400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:138352800-138355400	Enhancers	Placenta	Placenta
8	chr7:138353200-138354800	Enhancers	HepG2	liver
9	chr7:138353400-138354600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:138354000-138354800	Enhancers	Stomach Mucosa	stomach
11	chr7:138354000-138362600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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