Variant report

Variant	rs7796719
Chromosome Location	chr7:99937737-99937738
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99935191..99937909-chr7:99939169..99942843,3	K562	blood:
2	chr7:99932234..99937909-chr7:99939373..99942446,6	K562	blood:

Variant related genes	Relation type
ENSG00000078319	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57403878	1.00[AMR][1000 genomes]
rs57662248	1.00[AMR][1000 genomes]
rs60112004	1.00[AMR][1000 genomes]
rs61648592	1.00[AMR][1000 genomes]
rs73395957	1.00[AMR][1000 genomes]
rs73397512	1.00[AMR][1000 genomes]
rs73401429	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405329	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350965	chr7:99747460-100146105	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	nsv427794	chr7:99750981-99960900	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv428180	chr7:99750981-99960900	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv888774	chr7:99807265-99951315	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	esv3379367	chr7:99811760-99938687	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
6	esv3379649	chr7:99812207-99939196	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
8	esv3358931	chr7:99816130-99943645	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
9	esv3405423	chr7:99816156-99943860	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
10	esv3508070	chr7:99816206-99943813	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
11	esv3508071	chr7:99816206-99943813	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
12	esv1830570	chr7:99901968-99945827	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
13	nsv831071	chr7:99918025-100113413	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	287 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99934000-99938600	Weak transcription	GM12878-XiMat	blood
2	chr7:99934000-99977600	Weak transcription	Fetal Brain Male	brain
3	chr7:99934200-99938600	Weak transcription	Aorta	Aorta
4	chr7:99934200-99938600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:99934200-99938600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:99934200-99938600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:99934200-99938600	Weak transcription	Spleen	Spleen
8	chr7:99934200-99938800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:99934200-99938800	Weak transcription	Brain Angular Gyrus	brain
10	chr7:99934200-99940200	Weak transcription	Esophagus	oesophagus
11	chr7:99934200-99940400	Weak transcription	Brain Anterior Caudate	brain
12	chr7:99934200-99941600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr7:99934200-99941600	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:99934200-99941800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:99934200-99941800	Weak transcription	Gastric	stomach
16	chr7:99934200-99942200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr7:99934200-99942400	Weak transcription	Fetal Lung	lung
18	chr7:99934200-99943600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:99934200-99943600	Weak transcription	HSMMtube	muscle
20	chr7:99934200-99944000	Weak transcription	Fetal Kidney	kidney
21	chr7:99934200-99950800	Weak transcription	Small Intestine	intestine
22	chr7:99934400-99938600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr7:99934400-99938600	Weak transcription	Adipose Nuclei	Adipose
24	chr7:99934400-99938600	Weak transcription	Fetal Intestine Large	intestine
25	chr7:99934400-99938600	Weak transcription	Right Ventricle	heart
26	chr7:99934400-99938800	Weak transcription	Left Ventricle	heart
27	chr7:99934400-99940000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr7:99934400-99940400	Weak transcription	Osteobl	bone
29	chr7:99934400-99941800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr7:99934400-99941800	Weak transcription	Pancreas	Pancrea
31	chr7:99934400-99942400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:99934400-99943800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr7:99934400-99944000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr7:99934400-99944200	Weak transcription	Colonic Mucosa	Colon
35	chr7:99934400-99944200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr7:99934400-99944200	Weak transcription	Ovary	ovary
37	chr7:99934400-99963400	Weak transcription	Psoas Muscle	Psoas
38	chr7:99934600-99938600	Weak transcription	Thymus	Thymus
39	chr7:99934600-99938800	Weak transcription	Primary T cells from cord blood	blood
40	chr7:99934600-99939600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:99934800-99937800	Weak transcription	Fetal Muscle Leg	muscle
42	chr7:99934800-99938600	Weak transcription	Placenta	Placenta
43	chr7:99934800-99938800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr7:99934800-99939600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr7:99934800-99939800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr7:99934800-99940400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr7:99934800-99941800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr7:99934800-99944800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr7:99934800-99963800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr7:99935200-99940800	Strong transcription	HUES64 Cell Line	embryonic stem cell

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