Variant report

Variant	rs7796721
Chromosome Location	chr7:12879649-12879650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VWDE-8	chr7:12879517-12879661	l_3364_chr7:12873747-12879661_testes

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10249974	0.83[EUR][1000 genomes]
rs12112736	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13222073	0.81[ASN][1000 genomes]
rs13222475	0.94[ASN][1000 genomes]
rs13225358	0.81[ASN][1000 genomes]
rs17680996	0.91[ASN][1000 genomes]
rs17681117	0.81[ASN][1000 genomes]
rs2215334	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28407859	0.83[EUR][1000 genomes]
rs28587853	0.88[EUR][1000 genomes]
rs35464195	0.83[ASN][1000 genomes]
rs57183141	0.81[EUR][1000 genomes]
rs58528138	0.83[EUR][1000 genomes]
rs61324950	0.81[EUR][1000 genomes]
rs61620655	0.81[EUR][1000 genomes]
rs62445809	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62445810	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62445811	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62445812	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62445825	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62445826	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62445827	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62445828	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62445829	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62445831	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62445832	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62445833	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62445834	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62445836	0.83[ASN][1000 genomes]
rs62445837	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62445838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62445851	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62445852	0.81[ASN][1000 genomes]
rs62445853	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62445854	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62445855	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62445856	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62445857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62448165	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62448166	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62448167	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62448168	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62448170	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62448183	0.94[EUR][1000 genomes]
rs62448187	0.81[EUR][1000 genomes]
rs62448193	0.81[EUR][1000 genomes]
rs6956351	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6960791	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6961220	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6966108	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6966517	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs764903	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7780699	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7793712	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7794334	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	esv2422346	chr7:12739291-12883550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1027501	chr7:12743592-12927109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12878200-12880000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:12879000-12880400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:12879200-12879800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr7:12879200-12880000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:12879200-12880000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:12879200-12880000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr7:12879200-12880000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:12879200-12880400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:12879400-12879800	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr7:12879400-12879800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr7:12879400-12879800	Enhancers	Pancreas	Pancrea
12	chr7:12879400-12879800	Enhancers	Stomach Mucosa	stomach
13	chr7:12879400-12880000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:12879400-12880000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:12879400-12886200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:12879600-12880000	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr7:12879600-12880000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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