Variant report

Variant	rs7797068
Chromosome Location	chr7:79952276-79952277
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12113217	1.00[AMR][1000 genomes]
rs17153941	1.00[AMR][1000 genomes]
rs1850284	1.00[AMR][1000 genomes]
rs3914182	1.00[AMR][1000 genomes]
rs6971822	1.00[AMR][1000 genomes]
rs73382632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73382633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73382635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709163	1.00[AMR][1000 genomes]
rs7779762	1.00[AMR][1000 genomes]
rs7785624	1.00[AMR][1000 genomes]
rs7793978	1.00[AMR][1000 genomes]
rs7794116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79942800-79952800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:79943800-79952600	Weak transcription	NHEK	skin
3	chr7:79947800-79952400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:79947800-79952800	Weak transcription	HMEC	breast
5	chr7:79947800-79955400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:79947800-79956800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:79952000-79952800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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