Variant report

Variant	rs7797402
Chromosome Location	chr7:12072021-12072022
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10243371	1.00[AMR][1000 genomes]
rs55957039	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58075115	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58250924	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59168701	0.93[AFR][1000 genomes]
rs73676185	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73676197	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73676198	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73676199	1.00[AMR][1000 genomes]
rs73676200	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73676201	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73676328	1.00[AMR][1000 genomes]
rs73678840	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758103	chr7:11927239-12109419	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759510	chr7:11927239-12109419	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830906	chr7:12001764-12177869	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv606222	chr7:12023864-12084381	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv967454	chr7:12069700-12081150	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12067600-12072600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:12069600-12072200	Enhancers	NH-A	brain
3	chr7:12069600-12072600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:12069600-12072800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:12069600-12072800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:12069800-12072800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:12070400-12077600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:12071400-12072200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:12071800-12072200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:12071800-12072600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:12071800-12072800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:12071800-12072800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:12072000-12072400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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