Variant report

Variant	rs77977940
Chromosome Location	chr6:71595798-71595799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv525542	chr6:71589509-71599887	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv603639	chr6:71595151-71623253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71584400-71595800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:71593600-71596400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:71593800-71595800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:71593800-71596200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:71594000-71596400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:71594200-71596000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:71594400-71595800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:71594400-71596200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:71595400-71595800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:71595400-71595800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:71595400-71596000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:71595400-71596000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:71595600-71596000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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