Variant report

Variant	rs7798754
Chromosome Location	chr7:26345036-26345037
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:26343995..26346313-chr7:26352554..26355349,2	K562	blood:
2	chr7:26330256..26333180-chr7:26342684..26345768,4	K562	blood:
3	chr7:26239258..26242569-chr7:26344673..26347382,3	K562	blood:
4	chr7:26330233..26332997-chr7:26343202..26346610,3	MCF-7	breast:
5	chr7:26344840..26346808-chr7:26358431..26360772,2	K562	blood:
6	chr7:26339720..26342269-chr7:26343705..26346837,3	MCF-7	breast:
7	chr7:26239536..26242130-chr7:26342791..26345113,2	MCF-7	breast:
8	chr7:26343922..26347367-chr7:26351241..26354054,3	K562	blood:
9	chr7:26330311..26333159-chr7:26344268..26346177,2	K562	blood:
10	chr7:26337033..26341522-chr7:26343910..26346140,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000122565	Chromatin interaction
ENSG00000086300	Chromatin interaction
ENSG00000122566	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs6946449	1.00[AMR][1000 genomes]
rs6970564	1.00[YRI][hapmap]
rs73283333	1.00[AMR][1000 genomes]
rs73283335	1.00[AMR][1000 genomes]
rs73283394	1.00[AMR][1000 genomes]
rs73283397	1.00[AMR][1000 genomes]
rs73283400	1.00[AMR][1000 genomes]
rs73285217	1.00[AMR][1000 genomes]
rs73285259	1.00[AMR][1000 genomes]
rs7794205	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2761313	chr7:26340970-26389772	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26332400-26347000	Weak transcription	HMEC	breast
2	chr7:26332600-26347400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:26332600-26347400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:26332800-26346200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:26332800-26346400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:26332800-26346600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:26333600-26346600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:26333600-26351400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:26333800-26346800	Weak transcription	Pancreas	Pancrea
10	chr7:26334200-26346200	Weak transcription	K562	blood
11	chr7:26335000-26353000	Weak transcription	GM12878-XiMat	blood
12	chr7:26335200-26386400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:26342200-26347000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:26342600-26346200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:26342600-26347600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:26342600-26348200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr7:26343000-26346600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:26343200-26348200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr7:26343200-26348200	Genic enhancers	Primary B cells from peripheral blood	blood
20	chr7:26343200-26353000	Weak transcription	Spleen	Spleen
21	chr7:26343200-26355800	Weak transcription	Fetal Intestine Small	intestine
22	chr7:26343400-26346600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:26344000-26345800	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr7:26344200-26345200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr7:26344200-26346600	Enhancers	Liver	Liver
26	chr7:26344400-26345600	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr7:26344400-26345800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:26344600-26345200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr7:26344600-26345400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr7:26344600-26345600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:26344600-26345800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
32	chr7:26344600-26345800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr7:26344600-26346000	Enhancers	Primary T cells from cord blood	blood
34	chr7:26344600-26346800	Enhancers	Fetal Thymus	thymus
35	chr7:26344600-26351600	Enhancers	Placenta	Placenta
36	chr7:26344800-26345200	Enhancers	H1 Cell Line	embryonic stem cell
37	chr7:26344800-26345600	Enhancers	Thymus	Thymus
38	chr7:26344800-26345800	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr7:26344800-26346000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr7:26344800-26346000	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr7:26344800-26346000	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr7:26344800-26346000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr7:26344800-26347800	Enhancers	Adipose Nuclei	Adipose
44	chr7:26345000-26345200	Enhancers	Brain Anterior Caudate	brain
45	chr7:26345000-26345400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr7:26345000-26345400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr7:26345000-26345400	Enhancers	Small Intestine	intestine
48	chr7:26345000-26345400	Flanking Active TSS	HepG2	liver
49	chr7:26345000-26346000	Enhancers	Primary T cells fromperipheralblood	blood
50	chr7:26345000-26346400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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