The 2.0 version of rSNPBase

Variant report

Variant rs77988319
Chromosome Location chr18:43783227-43783228
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:43755600-43795600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
2 chr18:43756800-43796000 Weak transcription Esophagus oesophagus
3 chr18:43758800-43785000 Weak transcription Fetal Thymus thymus
4 chr18:43761200-43796000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr18:43763000-43785000 Weak transcription Small Intestine intestine
6 chr18:43763000-43795800 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr18:43763400-43784400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr18:43763400-43799200 Weak transcription Stomach Smooth Muscle stomach
9 chr18:43763600-43796000 Weak transcription Fetal Lung lung
10 chr18:43764600-43795800 Weak transcription Lung lung
11 chr18:43765600-43784200 Weak transcription Primary B cells from cord blood blood
12 chr18:43769200-43802800 Weak transcription Brain Hippocampus Middle brain
13 chr18:43769800-43784200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr18:43770800-43796000 Weak transcription Brain Substantia Nigra brain
15 chr18:43771800-43795800 Weak transcription Brain Anterior Caudate brain
16 chr18:43772000-43795800 Weak transcription Adipose Nuclei Adipose
17 chr18:43772000-43795800 Weak transcription Brain Cingulate Gyrus brain
18 chr18:43772200-43796000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr18:43772800-43795800 Weak transcription Fetal Muscle Trunk muscle
20 chr18:43774200-43783800 Weak transcription GM12878-XiMat blood
21 chr18:43774400-43795800 Weak transcription Fetal Stomach stomach
22 chr18:43776400-43802000 Weak transcription Brain Germinal Matrix brain
23 chr18:43776800-43795800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
24 chr18:43777000-43784600 Weak transcription HSMMtube muscle
25 chr18:43777000-43812000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr18:43777200-43791600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr18:43777200-43795600 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr18:43777800-43795800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr18:43777800-43805000 Weak transcription Fetal Intestine Small intestine
30 chr18:43778200-43789200 Enhancers Primary T helper cells fromperipheralblood blood
31 chr18:43778600-43788400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
32 chr18:43779000-43783800 Enhancers Dnd41 blood
33 chr18:43779600-43784200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr18:43779800-43783400 Weak transcription Primary T regulatory cells fromperipheralblood blood
35 chr18:43779800-43783800 Weak transcription NHEK skin
36 chr18:43779800-43784200 Weak transcription HUES48 Cell Line embryonic stem cell
37 chr18:43780000-43784600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr18:43780000-43785000 Weak transcription HUVEC blood vessel
39 chr18:43780000-43785200 Weak transcription Thymus Thymus
40 chr18:43780000-43791400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr18:43780000-43791400 Weak transcription Osteobl bone
42 chr18:43780000-43793200 Weak transcription Liver Liver
43 chr18:43780000-43795800 Weak transcription Rectal Mucosa Donor 31 rectum
44 chr18:43780200-43793200 Weak transcription Fetal Heart heart
45 chr18:43780400-43791400 Weak transcription K562 blood
46 chr18:43780600-43784600 Enhancers Primary neutrophils fromperipheralblood blood
47 chr18:43780600-43784800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr18:43780600-43784800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
49 chr18:43780600-43786200 Weak transcription Right Atrium heart
50 chr18:43780600-43790600 Weak transcription Left Ventricle heart

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Last update: Aug 31, 2015