Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10173293	0.95[ASN][1000 genomes]
rs10197517	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap]
rs10496632	0.82[CHB][hapmap]
rs1170618	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1170632	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1170635	0.94[ASN][1000 genomes]
rs12711674	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs12711676	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs13391053	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs13395031	0.95[ASN][1000 genomes]
rs13403332	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2901199	0.96[ASN][1000 genomes]
rs34213745	0.94[ASN][1000 genomes]
rs6541944	0.94[ASN][1000 genomes]
rs6707012	0.94[ASN][1000 genomes]
rs6719774	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7424259	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs7558880	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs779986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs779989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs779991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs779992	SFT2D3	cis	cerebellum	SCAN
rs779992	AMMECR1L	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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