Variant report

Variant	rs7800594
Chromosome Location	chr7:145847457-145847458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10216036	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10230226	1.00[CEU][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10237336	1.00[CEU][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10248963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10256834	1.00[CEU][hapmap]
rs10263587	1.00[CEU][hapmap]
rs10265805	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs10268545	1.00[CEU][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10277217	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10428910	1.00[CEU][hapmap]
rs11974152	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11978140	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11980028	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12333427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12703773	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12703779	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12703780	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12703781	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12703784	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12703785	1.00[CEU][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12703786	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12703788	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12703790	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12703791	1.00[CEU][hapmap]
rs13221011	0.88[EUR][1000 genomes]
rs13223500	1.00[CEU][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13223589	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13224076	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13224183	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13230964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13238577	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13241192	0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1405115	1.00[CEU][hapmap]
rs1464959	1.00[CEU][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1464960	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1464961	1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1526072	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1526074	1.00[CEU][hapmap]
rs1880729	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1917936	1.00[CEU][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2014200	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2030836	1.00[CEU][hapmap];0.97[YRI][hapmap]
rs2080179	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs2080180	1.00[CEU][hapmap]
rs2098288	0.96[CEU][hapmap];0.88[YRI][hapmap]
rs2430324	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs2539738	1.00[CEU][hapmap]
rs2539744	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2539745	0.90[CEU][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs2539746	1.00[CEU][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs2539747	1.00[CEU][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs2693306	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2693307	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs28564084	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28600774	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34038575	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4327781	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4345482	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4445148	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4445149	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4460283	0.82[EUR][1000 genomes]
rs4506126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464733	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6464737	1.00[CEU][hapmap];0.85[JPT][hapmap];0.97[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6464738	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6464739	1.00[CEU][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6946245	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6947847	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6949141	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6959235	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6960368	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6960388	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6960982	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6966811	0.83[CEU][hapmap];0.80[YRI][hapmap]
rs7777761	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7779760	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7780228	1.00[CEU][hapmap];0.97[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7785592	0.95[CEU][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7785673	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7786007	1.00[CEU][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7787269	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7788768	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7789370	1.00[CEU][hapmap];0.97[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7793060	1.00[CEU][hapmap];0.97[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7794609	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7794731	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7794944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7795024	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7795190	1.00[CEU][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7795488	1.00[CEU][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7797553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7798919	0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7805261	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811486	0.91[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7811558	0.96[CEU][hapmap]
rs802530	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs802532	1.00[CEU][hapmap];0.88[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs802534	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs802535	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes]
rs802538	1.00[CEU][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs802539	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs802540	1.00[CEU][hapmap]
rs802542	1.00[CEU][hapmap]
rs802543	1.00[CEU][hapmap]
rs802544	1.00[CEU][hapmap]
rs802546	1.00[CEU][hapmap]
rs802547	1.00[CEU][hapmap]
rs802548	1.00[CEU][hapmap]
rs802550	1.00[CEU][hapmap]
rs802577	0.95[CEU][hapmap]
rs802580	1.00[CEU][hapmap]
rs810596	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs940932	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs940933	1.00[CEU][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs949953	1.00[CEU][hapmap]
rs955107	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs955108	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023861	chr7:145606069-145910049	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539170	chr7:145606069-145910049	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv981604	chr7:145773003-145935052	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv608927	chr7:145803095-145882001	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv933697	chr7:145844438-145864611	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv889386	chr7:145845418-145935428	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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