Variant report

Variant	rs7801428
Chromosome Location	chr7:100727105-100727106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:100727024..100731132-chr7:100797267..100800501,4	MCF-7	breast:
2	chr7:100486439..100489230-chr7:100726552..100729974,6	MCF-7	breast:
3	chr7:100480504..100482568-chr7:100725845..100728828,2	MCF-7	breast:
4	chr7:100492344..100495062-chr7:100726871..100729209,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106367	Chromatin interaction
ENSG00000176125	Chromatin interaction
ENSG00000087085	Chromatin interaction
ENSG00000087087	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12535610	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs36093166	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4292618	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4480033	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4524722	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4621721	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4727478	0.81[AMR][1000 genomes]
rs62483743	0.83[AMR][1000 genomes]
rs62483746	0.83[AMR][1000 genomes]
rs6465783	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6465785	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6945281	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6948536	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6957750	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6965671	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6966570	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6968929	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7797559	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832517	chr7:100355490-100749246	Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv2758125	chr7:100355490-100749246	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	esv2759547	chr7:100355490-100749246	Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
4	esv1826021	chr7:100525848-100749246	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv1846644	chr7:100525848-100749246	Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	esv1822460	chr7:100606044-100749246	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv427796	chr7:100606044-100749246	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv428181	chr7:100606044-100749246	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv831074	chr7:100606051-100745532	Bivalent Enhancer Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv1031942	chr7:100606734-100788660	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	esv1833777	chr7:100632790-100800131	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv1033081	chr7:100669629-100771824	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
13	esv1811048	chr7:100675933-100730280	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
14	esv1831657	chr7:100675933-100730280	Bivalent/Poised TSS Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
15	nsv831075	chr7:100692297-100917018	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
16	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
17	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100716800-100728400	Weak transcription	Right Atrium	heart
2	chr7:100721000-100727800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:100721000-100727800	Weak transcription	K562	blood
4	chr7:100721000-100728000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:100721000-100728000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:100721000-100728000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:100721000-100728000	Weak transcription	Adipose Nuclei	Adipose
8	chr7:100721000-100728000	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:100721000-100728000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:100721000-100728000	Weak transcription	Brain Substantia Nigra	brain
11	chr7:100721200-100728000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:100721200-100728000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:100721200-100728200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:100721400-100728200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:100721400-100728200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr7:100721800-100728200	Weak transcription	Primary B cells from cord blood	blood
17	chr7:100725000-100728200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:100725200-100728000	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr7:100726000-100728000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr7:100726400-100728200	Enhancers	HepG2	liver

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