Variant report

Variant	rs78014975
Chromosome Location	chr15:77452601-77452602
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77449030..77451156-chr15:77452174..77453774,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77426200-77453200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr15:77427600-77460600	Weak transcription	Right Ventricle	heart
3	chr15:77434200-77460400	Weak transcription	Fetal Brain Male	brain
4	chr15:77436000-77457800	Weak transcription	Spleen	Spleen
5	chr15:77437000-77471200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:77437600-77453400	Weak transcription	HMEC	breast
7	chr15:77438000-77453200	Weak transcription	Fetal Heart	heart
8	chr15:77438000-77453400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:77438400-77461000	Weak transcription	NH-A	brain
10	chr15:77438600-77457600	Weak transcription	Gastric	stomach
11	chr15:77438600-77461400	Weak transcription	Aorta	Aorta
12	chr15:77438600-77469000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:77438600-77470800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:77439800-77460600	Weak transcription	HSMMtube	muscle
15	chr15:77440200-77453000	Weak transcription	Fetal Kidney	kidney
16	chr15:77444200-77460600	Weak transcription	NHEK	skin
17	chr15:77445200-77461000	Weak transcription	Small Intestine	intestine
18	chr15:77446400-77454600	Weak transcription	Esophagus	oesophagus
19	chr15:77447800-77453800	Weak transcription	K562	blood
20	chr15:77447800-77456000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:77448200-77457400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:77448800-77453000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr15:77449000-77465200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:77449600-77453600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr15:77449800-77453200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:77450000-77453200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr15:77450000-77453400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr15:77450000-77453400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr15:77450000-77455200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:77450000-77458000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr15:77450000-77460600	Weak transcription	Left Ventricle	heart
32	chr15:77450200-77453400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr15:77450200-77453400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr15:77450400-77452800	Weak transcription	Colonic Mucosa	Colon
35	chr15:77450400-77453200	Weak transcription	Brain Angular Gyrus	brain
36	chr15:77450400-77471200	Weak transcription	Fetal Muscle Leg	muscle
37	chr15:77450600-77453000	Weak transcription	Liver	Liver
38	chr15:77450600-77471200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr15:77450800-77452800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr15:77450800-77453200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr15:77450800-77453800	Weak transcription	Colon Smooth Muscle	Colon
42	chr15:77450800-77454600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:77450800-77471200	Weak transcription	Fetal Muscle Trunk	muscle
44	chr15:77451000-77453200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:77451000-77453200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:77451000-77453200	Weak transcription	Dnd41	blood
47	chr15:77451000-77453200	Weak transcription	NHLF	lung
48	chr15:77451000-77453400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr15:77451000-77453400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr15:77451000-77453400	Weak transcription	Fetal Lung	lung

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