Variant report

Variant	rs7801824
Chromosome Location	chr7:116573464-116573465
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116571000..116573926-chr7:116760431..116762728,3	MCF-7	breast:
2	chr7:116512871..116514747-chr7:116571202..116574022,2	K562	blood:
3	7:115847372-115857098..7:116568602-116574330	GM12878	blood:
4	chr7:116571244..116573563-chr7:116761792..116763514,2	MCF-7	breast:
5	chr7:116569687..116574376-chr7:116579850..116586721,6	K562	blood:
6	chr7:116569534..116572103-chr7:116572304..116574237,2	K562	blood:
7	7:116568602-116574330..7:116957165-116964911	H1-hESC	embryonic stem cell:	embryo
8	chr7:116572167..116574220-chr7:116592125..116593792,2	MCF-7	breast:
9	7:116568602-116574330..7:116754962-116765597	GM12878	blood:
10	7:116568602-116574330..7:116651084-116657331	GM12878	blood:
11	7:116568602-116574330..7:116728195-116740907	GM12878	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000226367	Chromatin interaction
ENSG00000222150	Chromatin interaction
ENSG00000105989	Chromatin interaction
ENSG00000004866	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7802605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7803820	0.82[ASN][1000 genomes]
rs7807976	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv889074	chr7:116552859-116604194	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv889075	chr7:116552859-116610237	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv889073	chr7:116552859-116611113	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv366350	chr7:116569927-116573535	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116559200-116576000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:116570800-116592800	Weak transcription	Right Atrium	heart
3	chr7:116571000-116589000	Weak transcription	Fetal Lung	lung
4	chr7:116571200-116575800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:116571400-116575600	Weak transcription	Fetal Heart	heart
6	chr7:116572000-116575200	Enhancers	Placenta	Placenta
7	chr7:116573400-116574000	Weak transcription	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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