Variant report

Variant	rs7803055
Chromosome Location	chr7:97480989-97480990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10486009	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10486010	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10486011	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11760644	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11762319	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11773753	0.81[EUR][1000 genomes]
rs12668015	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12672215	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13224424	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13226994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13227012	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13237150	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17131831	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34444766	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34511149	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34836650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35381536	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41278830	0.81[EUR][1000 genomes]
rs55960605	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6966699	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71563538	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7786920	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7798347	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv428178	chr7:97402756-97648029	Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758124	chr7:97476284-97648029	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2759546	chr7:97476284-97648029	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97472800-97483000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:97474800-97482600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:97475000-97492800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:97477000-97481200	Weak transcription	Brain Substantia Nigra	brain
5	chr7:97477200-97485400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:97477400-97481200	Weak transcription	Pancreas	Pancrea
7	chr7:97477400-97481200	Weak transcription	HSMM	muscle
8	chr7:97477600-97500600	Weak transcription	Thymus	Thymus
9	chr7:97477800-97481400	Weak transcription	Fetal Lung	lung
10	chr7:97478400-97481000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:97478600-97481000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:97478600-97481200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:97478600-97483400	Weak transcription	Osteobl	bone
14	chr7:97478800-97481000	Weak transcription	Primary T cells from cord blood	blood
15	chr7:97478800-97481000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr7:97478800-97481200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr7:97479000-97481000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:97479000-97481200	Weak transcription	HepG2	liver
19	chr7:97479000-97501000	Weak transcription	Fetal Intestine Large	intestine
20	chr7:97479200-97481000	Weak transcription	Aorta	Aorta
21	chr7:97479200-97481000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr7:97479200-97481000	Weak transcription	Gastric	stomach
23	chr7:97479200-97481000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr7:97479200-97481200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr7:97479200-97486200	Weak transcription	Small Intestine	intestine
26	chr7:97479200-97500800	Weak transcription	Right Ventricle	heart
27	chr7:97479400-97481200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:97479400-97481200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr7:97479400-97481200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:97479400-97481200	Weak transcription	Adipose Nuclei	Adipose
31	chr7:97479400-97481200	Weak transcription	Brain Anterior Caudate	brain
32	chr7:97479400-97481200	Weak transcription	Esophagus	oesophagus
33	chr7:97479400-97481200	Weak transcription	Fetal Thymus	thymus
34	chr7:97479400-97481200	Weak transcription	Spleen	Spleen
35	chr7:97479400-97483400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr7:97479400-97484400	Weak transcription	Hela-S3	cervix
37	chr7:97479400-97487200	Weak transcription	Left Ventricle	heart
38	chr7:97479400-97501000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr7:97479400-97501000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr7:97479600-97481200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:97479600-97481200	Weak transcription	Fetal Brain Female	brain
42	chr7:97479600-97481200	Weak transcription	Fetal Intestine Small	intestine
43	chr7:97479600-97481200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr7:97479600-97481400	Weak transcription	HMEC	breast
45	chr7:97479600-97483400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr7:97479600-97486800	Weak transcription	NH-A	brain
47	chr7:97479600-97487000	Weak transcription	Fetal Stomach	stomach
48	chr7:97479600-97501000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:97479800-97481200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr7:97479800-97482200	Weak transcription	Psoas Muscle	Psoas

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