Variant report

Variant	rs780364
Chromosome Location	chr3:59761678-59761679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs492695	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs510794	0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs661807	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv460562	chr3:59760118-59826778	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv590381	chr3:59760118-59826778	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59756800-59763600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:59757800-59762200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:59759000-59762800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr3:59759200-59761800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:59759400-59761800	Enhancers	Brain Germinal Matrix	brain
6	chr3:59759400-59762800	Weak transcription	Primary B cells from cord blood	blood
7	chr3:59759400-59765200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:59759600-59762200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr3:59759600-59762800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:59759600-59763000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr3:59759600-59763000	Enhancers	Dnd41	blood
12	chr3:59759600-59763200	Weak transcription	GM12878-XiMat	blood
13	chr3:59759800-59761800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:59759800-59762400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:59760200-59762000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr3:59760400-59761800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr3:59760400-59776000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr3:59760800-59762400	Weak transcription	Primary T cells from cord blood	blood
19	chr3:59761000-59764200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr3:59761000-59772400	Weak transcription	Fetal Brain Male	brain
21	chr3:59761200-59761800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:59761200-59768200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:59761400-59761800	Weak transcription	Fetal Thymus	thymus
24	chr3:59761400-59762200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:59761600-59762600	Enhancers	Fetal Brain Female	brain

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