Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38204751..38208783-chr7:38210217..38214308,4	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10046527	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251985	0.94[EUR][1000 genomes]
rs10253621	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11769863	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11769941	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12155411	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1990362	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1990363	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2037602	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2079849	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2534597	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2534598	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2534599	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4295563	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4339535	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4720271	0.93[EUR][1000 genomes]
rs4723735	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6462816	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6969307	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6973458	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6973870	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs756392	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7778240	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7778377	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7787991	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016355	chr7:38168232-38372719	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv830963	chr7:38172988-38344779	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2762664	chr7:38201814-38228480	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38210200-38217000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:38210200-38217000	Weak transcription	NH-A	brain
3	chr7:38210400-38217000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:38211800-38217200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:38212000-38214400	ZNF genes & repeats	GM12878-XiMat	blood
6	chr7:38212400-38217200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:38212600-38217000	Weak transcription	Monocytes-CD14+_RO01746	blood

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