Variant report

Variant	rs7804091
Chromosome Location	chr7:19980396-19980397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7785465	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv887826	chr7:19816240-20033899	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1027445	chr7:19947297-20211733	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv887830	chr7:19970584-20114589	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19956400-19988000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:19960000-19983000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:19960800-19982800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:19960800-19993200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:19965000-19985600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:19973800-19982200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:19975200-19993200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:19978600-19980600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:19979000-19980400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:19979000-19980400	Enhancers	NHDF-Ad	bronchial
11	chr7:19979000-19980600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:19979000-19981000	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr7:19979600-19980600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:19979600-19980600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:19979600-19981200	Enhancers	Brain Germinal Matrix	brain
16	chr7:19980000-19984000	Weak transcription	HMEC	breast
17	chr7:19980000-19984200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:19980000-19984200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:19980000-19993600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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