Variant report

Variant	rs7804198
Chromosome Location	chr7:70298857-70298858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr7:70298722-70299021	SK-N-SH_RA	brain:	n/a	n/a
2	JUND	chr7:70298772-70299062	HepG2	liver:	n/a	chr7:70298901-70298912 chr7:70298955-70298966
3	TEAD4	chr7:70298582-70299159	SK-N-SH	brain:	n/a	n/a
4	TEAD4	chr7:70298590-70299098	ECC-1	luminal epithelium:	n/a	n/a
5	POLR2A	chr7:70298722-70299070	SK-N-SH	brain:	n/a	n/a
6	GATA3	chr7:70298570-70299133	SK-N-SH	brain:	n/a	n/a
7	FOXM1	chr7:70298600-70299096	ECC-1	luminal epithelium:	n/a	n/a
8	TCF12	chr7:70298650-70299082	ECC-1	luminal epithelium:	n/a	n/a
9	PBX3	chr7:70298649-70299080	SK-N-SH	brain:	n/a	n/a
10	NFIC	chr7:70298703-70299102	ECC-1	luminal epithelium:	n/a	n/a
11	FOSL2	chr7:70298682-70299066	SK-N-SH	brain:	n/a	n/a
12	TCF12	chr7:70298605-70299057	ECC-1	luminal epithelium:	n/a	n/a
13	EP300	chr7:70298684-70299249	ECC-1	luminal epithelium:	n/a	n/a
14	TCF12	chr7:70298467-70299111	SK-N-SH	brain:	n/a	n/a
15	GATA3	chr7:70298442-70299165	SK-N-SH	brain:	n/a	n/a
16	NFIC	chr7:70298586-70299076	SK-N-SH	brain:	n/a	n/a
17	PBX3	chr7:70298506-70299082	SK-N-SH	brain:	n/a	n/a
18	TEAD4	chr7:70298662-70299072	ECC-1	luminal epithelium:	n/a	n/a
19	JUND	chr7:70298644-70299141	SK-N-SH	brain:	n/a	chr7:70298901-70298912 chr7:70298955-70298966
20	JUND	chr7:70298632-70299252	SK-N-SH	brain:	n/a	chr7:70298901-70298912 chr7:70298955-70298966
21	TEAD4	chr7:70298457-70299088	SK-N-SH	brain:	n/a	n/a
22	JUND	chr7:70298587-70299094	SK-N-SH	brain:	n/a	chr7:70298901-70298912 chr7:70298955-70298966
23	FOSL2	chr7:70298585-70299113	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000236978	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56957618	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57862917	1.00[AMR][1000 genomes]
rs62456776	1.00[AMR][1000 genomes]
rs73704822	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704861	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704862	1.00[AMR][1000 genomes]
rs73704864	1.00[AMR][1000 genomes]
rs73706414	1.00[AMR][1000 genomes]
rs9690482	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025164	chr7:70061655-70469358	Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv538931	chr7:70061655-70469358	Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1017876	chr7:70073764-70434599	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1022747	chr7:70169254-70301285	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028853	chr7:70211620-70523331	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv533212	chr7:70220687-70511129	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv888341	chr7:70249358-70316365	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv429772	chr7:70250125-70357061	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv607437	chr7:70251651-70568354	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1031764	chr7:70271645-70420426	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1034508	chr7:70277984-70420426	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1019598	chr7:70285963-70358327	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv429773	chr7:70285994-70357061	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv3350369	chr7:70288094-70503884	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv429774	chr7:70294296-70357061	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv428503	chr7:70295677-70463201	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv1016072	chr7:70297559-70358327	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70295400-70300200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:70295400-70301800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:70298600-70299000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:70298600-70299000	Enhancers	HSMM	muscle
5	chr7:70298600-70299000	Enhancers	NHEK	skin
6	chr7:70298600-70299000	Enhancers	Osteobl	bone
7	chr7:70298800-70299000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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