Variant report

Variant	rs7804204
Chromosome Location	chr7:7771501-7771502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:7769666..7772016-chr7:7775806..7779623,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270314	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11971408	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11971584	0.97[EUR][1000 genomes]
rs11972014	0.97[EUR][1000 genomes]
rs11981145	0.97[EUR][1000 genomes]
rs11984316	1.00[CHB][hapmap]
rs12112667	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs17136804	0.95[EUR][1000 genomes]
rs17137480	1.00[CHB][hapmap]
rs17482123	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs2110553	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs2881960	0.85[CEU][hapmap]
rs2881962	0.82[EUR][1000 genomes]
rs4725015	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs4725024	1.00[CHB][hapmap]
rs59441244	0.97[EUR][1000 genomes]
rs6957738	0.82[EUR][1000 genomes]
rs717297	1.00[CHB][hapmap]
rs7456324	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs7777879	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs7798802	0.97[EUR][1000 genomes]
rs886723	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv887477	chr7:7531819-7810122	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv8043	chr7:7589195-7862802	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv887478	chr7:7670718-7917360	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv887479	chr7:7681131-7779091	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv887480	chr7:7681131-7917360	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv887481	chr7:7681576-7779324	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv887482	chr7:7682439-7785047	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv887483	chr7:7682439-7798217	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv887485	chr7:7692483-7917360	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv887486	chr7:7712498-7785047	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
15	nsv1026564	chr7:7734846-7897847	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	nsv887487	chr7:7740914-7802561	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	nsv887488	chr7:7770203-7794484	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv887489	chr7:7770203-7913311	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7737600-7778800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:7743600-7772800	Weak transcription	Gastric	stomach
3	chr7:7748200-7772200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:7752600-7790400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:7755400-7772800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:7759000-7785800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:7759400-7772000	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:7759400-7791200	Weak transcription	Esophagus	oesophagus
9	chr7:7759600-7779000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr7:7759600-7780000	Weak transcription	Primary T cells from cord blood	blood
11	chr7:7759600-7786800	Weak transcription	Aorta	Aorta
12	chr7:7759800-7776800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:7760800-7778400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:7760800-7785200	Weak transcription	Primary B cells from cord blood	blood
15	chr7:7761000-7777800	Weak transcription	Thymus	Thymus
16	chr7:7767400-7776400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:7769000-7771600	Enhancers	Fetal Muscle Leg	muscle
18	chr7:7769200-7773800	Enhancers	HepG2	liver
19	chr7:7769400-7772000	Weak transcription	Brain Substantia Nigra	brain
20	chr7:7769800-7772400	Enhancers	Stomach Mucosa	stomach
21	chr7:7770000-7772000	Enhancers	Brain Germinal Matrix	brain
22	chr7:7770600-7771600	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr7:7770600-7772000	Enhancers	HUVEC	blood vessel
24	chr7:7770600-7772600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr7:7770600-7773400	Enhancers	Hela-S3	cervix
26	chr7:7770800-7771600	Enhancers	Fetal Intestine Large	intestine
27	chr7:7770800-7771600	Enhancers	Ovary	ovary
28	chr7:7770800-7771600	Enhancers	Small Intestine	intestine
29	chr7:7770800-7773200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr7:7771000-7773000	Enhancers	A549	lung
31	chr7:7771000-7773200	Enhancers	HSMMtube	muscle
32	chr7:7771000-7773400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:7771000-7773600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:7771000-7773800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr7:7771000-7773800	Enhancers	HSMM	muscle
36	chr7:7771000-7776400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr7:7771000-7785600	Weak transcription	Pancreas	Pancrea
38	chr7:7771200-7772800	Enhancers	Rectal Smooth Muscle	rectum
39	chr7:7771200-7785800	Weak transcription	Fetal Intestine Small	intestine
40	chr7:7771400-7771600	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr7:7771400-7771600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr7:7771400-7771600	Enhancers	Brain Angular Gyrus	brain
43	chr7:7771400-7771600	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr7:7771400-7771600	Enhancers	Stomach Smooth Muscle	stomach
45	chr7:7771400-7772200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:7771400-7772200	Enhancers	Adipose Nuclei	Adipose
47	chr7:7771400-7772200	Enhancers	Fetal Heart	heart
48	chr7:7771400-7772200	Enhancers	Osteobl	bone
49	chr7:7771400-7773000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:7771400-7773000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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