Variant report

Variant	rs78047532
Chromosome Location	chr6:37475238-37475239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FTSJD2-1	chr6:37475124-37475480	ENSG00000204110.5
2	lnc-FTSJD2-1	chr6:37475124-37475480	ENSG00000204110.5

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv3345484	chr6:37474399-37476947	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3336526	chr6:37475076-37476236	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37468000-37475800	Enhancers	Thymus	Thymus
2	chr6:37468000-37477200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr6:37468000-37483600	Enhancers	Fetal Thymus	thymus
4	chr6:37468200-37476000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr6:37470600-37477000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr6:37471000-37475800	Enhancers	Primary T cells from cord blood	blood
7	chr6:37471000-37476000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:37471200-37476000	Weak transcription	Dnd41	blood
9	chr6:37471200-37477800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:37471200-37483600	Weak transcription	Spleen	Spleen
11	chr6:37471400-37475800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:37471800-37476000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:37472000-37476000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:37472200-37475800	Weak transcription	GM12878-XiMat	blood
15	chr6:37472400-37476000	Weak transcription	Fetal Kidney	kidney
16	chr6:37472800-37475800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:37472800-37476000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:37473800-37475400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:37473800-37482200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:37474400-37477000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:37474600-37475800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr6:37474600-37476200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:37474600-37476800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr6:37474800-37477400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:37475000-37475800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:37475000-37476200	Enhancers	H1 Cell Line	embryonic stem cell
27	chr6:37475000-37476200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr6:37475000-37476200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:37475200-37475600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:37475200-37475800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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