Variant report
| Variant | rs7805221 |
|---|---|
| Chromosome Location | chr7:26306168-26306169 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:26301633..26304358-chr7:26306082..26308143,2 | K562 | blood: | |
| 2 | chr7:26239171..26243202-chr7:26305384..26313158,8 | K562 | blood: | |
| 3 | chr7:26237378..26238939-chr7:26305389..26307516,2 | K562 | blood: | |
| 4 | chr7:26302115..26304358-chr7:26305370..26308794,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000122565 | Chromatin interaction |
| ENSG00000122566 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs11770835 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2391267 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2562787 | 0.88[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2562788 | 1.00[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs60123787 | 0.88[AMR][1000 genomes] |
| rs66824314 | 0.89[ASN][1000 genomes] |
| rs73066415 | 0.88[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73066420 | 0.89[ASN][1000 genomes] |
| rs73066426 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs73066502 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021308 | chr7:26116605-26419720 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 166 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018971 | chr7:26161228-26380361 | Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 165 gene(s) | inside rSNPs | diseases |
| 3 | nsv1018352 | chr7:26298095-26341825 | Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv1029596 | chr7:26302739-26737913 | Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 5 | nsv538804 | chr7:26302739-26737913 | Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 6 | esv12413 | chr7:26305273-26308249 | Enhancers Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 7 | esv3477160 | chr7:26305361-26308268 | Enhancers Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 8 | esv3477161 | chr7:26305361-26308268 | Flanking Active TSS Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
