Variant report

Variant	rs7805440
Chromosome Location	chr7:15972392-15972393
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10228138	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10257027	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10950591	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1997263	0.86[EUR][1000 genomes]
rs1997264	0.86[EUR][1000 genomes]
rs2190941	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2530785	0.86[EUR][1000 genomes]
rs6944544	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6962565	0.88[AFR][1000 genomes]
rs7794657	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv520205	chr7:15964238-15975614	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7805440	TSPAN13	cis	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15970400-15973600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:15971200-15972600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:15971400-15973200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:15971800-15972400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr7:15972200-15972400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr7:15972200-15972400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr7:15972200-15972400	Enhancers	Fetal Lung	lung
8	chr7:15972200-15972800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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