Variant report

Variant	rs7805875
Chromosome Location	chr7:140017013-140017014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140014544..140017368-chr7:140028842..140031384,2	MCF-7	breast:
2	chr7:140009936..140012415-chr7:140015586..140017552,2	MCF-7	breast:
3	chr7:139873831..139877475-chr7:140012242..140019161,9	MCF-7	breast:
4	chr7:140014746..140017090-chr7:140018395..140020879,3	K562	blood:
5	chr7:140003129..140009929-chr7:140011645..140017997,10	MCF-7	breast:
6	chr7:139874735..139878684-chr7:140013731..140018103,7	MCF-7	breast:
7	chr7:140015118..140018618-chr7:140021344..140024336,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260231	Chromatin interaction
ENSG00000006459	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10246187	0.82[ASN][1000 genomes]
rs35182343	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35652371	0.86[EUR][1000 genomes]
rs4373438	0.81[ASN][1000 genomes]
rs55772608	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7785579	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140013200-140017800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:140013600-140018600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr7:140014800-140017200	Enhancers	Fetal Brain Male	brain
4	chr7:140015400-140017400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr7:140015400-140017600	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr7:140015600-140017400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr7:140015600-140022000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:140015800-140017600	Enhancers	Fetal Thymus	thymus
9	chr7:140015800-140018200	Enhancers	K562	blood
10	chr7:140016000-140017600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:140016000-140022400	Weak transcription	Gastric	stomach
12	chr7:140016200-140025600	Weak transcription	Right Atrium	heart
13	chr7:140016200-140026000	Weak transcription	Fetal Kidney	kidney
14	chr7:140016200-140034000	Weak transcription	Pancreas	Pancrea
15	chr7:140016400-140017600	Enhancers	HMEC	breast
16	chr7:140016400-140019800	Weak transcription	Primary B cells from cord blood	blood
17	chr7:140016400-140020400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr7:140016400-140025600	Weak transcription	Placenta	Placenta
19	chr7:140016400-140025800	Weak transcription	Ovary	ovary
20	chr7:140016800-140017200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:140016800-140017600	Enhancers	Lung	lung
22	chr7:140016800-140017600	Enhancers	Stomach Mucosa	stomach
23	chr7:140016800-140025600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:140016800-140025600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:140016800-140025800	Weak transcription	Osteobl	bone
26	chr7:140016800-140034200	Weak transcription	Small Intestine	intestine
27	chr7:140017000-140017200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr7:140017000-140017800	Weak transcription	Brain Hippocampus Middle	brain
29	chr7:140017000-140019800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:140017000-140022400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr7:140017000-140023800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:140017000-140024000	Weak transcription	Colon Smooth Muscle	Colon
33	chr7:140017000-140025600	Weak transcription	Fetal Intestine Small	intestine
34	chr7:140017000-140025600	Weak transcription	Hela-S3	cervix
35	chr7:140017000-140025600	Weak transcription	HepG2	liver
36	chr7:140017000-140025800	Weak transcription	Adipose Nuclei	Adipose
37	chr7:140017000-140033200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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