Variant report

Variant	rs7806084
Chromosome Location	chr7:63923951-63923952
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 147 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs11760441	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11760623	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11761642	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11762751	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11763264	0.95[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11763268	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11764145	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11764842	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11765236	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11766677	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11767478	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11768338	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11768668	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11768840	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11770985	0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11771181	0.95[CEU][hapmap]
rs11771906	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11772062	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11772160	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11772218	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12113093	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12113237	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12113448	0.84[ASN][1000 genomes]
rs12672662	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1446886	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17138886	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17146398	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17840384	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1853407	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2692110	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2862795	0.95[CEU][hapmap];0.90[JPT][hapmap]
rs2902179	0.90[AFR][1000 genomes]
rs34764583	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35224539	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35255833	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4718083	0.95[CEU][hapmap]
rs56799822	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs57093212	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57182707	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57196191	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57198153	0.82[AFR][1000 genomes]
rs57979919	0.80[ASN][1000 genomes]
rs58113403	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs583281	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs58450777	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs587711	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs58922055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58967958	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs58990166	0.95[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs59015730	0.88[ASN][1000 genomes]
rs590890	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs59622152	0.95[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs59856772	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs599238	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs60118162	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61055703	0.84[ASN][1000 genomes]
rs636404	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs639274	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6460162	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6460165	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6460166	0.82[AFR][1000 genomes]
rs659055	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs664631	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs682158	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs682587	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs686236	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6952579	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6954330	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6954460	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6954776	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6962076	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6964427	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6965883	0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6967116	0.95[CEU][hapmap]
rs6968279	0.95[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6969879	0.95[CEU][hapmap]
rs6970282	0.83[AFR][1000 genomes]
rs6971827	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6976217	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6977201	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6978561	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73125202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73127003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73127006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73127029	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73127055	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73128725	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73128743	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73128750	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73128752	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73128756	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73128757	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73128759	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73128760	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73128768	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73128770	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73128772	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73130731	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73130733	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73130741	0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs73130748	0.84[ASN][1000 genomes]
rs73130750	0.88[ASN][1000 genomes]
rs73130757	0.88[ASN][1000 genomes]
rs73130760	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73130769	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73130774	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73130775	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73130779	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73130787	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs73134703	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs73134705	0.89[AFR][1000 genomes]
rs7776933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776937	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7778593	0.85[CEU][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7784968	0.90[JPT][hapmap]
rs7785818	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7787877	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7788788	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7793429	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7793623	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7797688	0.90[JPT][hapmap]
rs7801917	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7802768	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7803294	0.95[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7804897	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7806288	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7806747	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9918511	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9918574	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv534361	chr7:63328472-63955286	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv888259	chr7:63363001-64009193	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv1016466	chr7:63438466-63969492	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	nsv429759	chr7:63662150-64110550	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv429760	chr7:63687850-64110550	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv429761	chr7:63747498-64096138	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv482324	chr7:63764660-63934144	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	esv2764000	chr7:63766980-64275251	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
12	nsv429762	chr7:63790450-64110550	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
14	nsv1031703	chr7:63839601-64225952	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
15	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
17	nsv1017023	chr7:63891057-63937574	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1019403	chr7:63913361-63962134	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7806084	ZNF107	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63923800-63924000	Weak transcription	K562	blood
2	chr7:63923800-63924600	Active TSS	Primary B cells from cord blood	blood
3	chr7:63923800-63924600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr7:63923800-63924800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:63923800-63924800	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr7:63923800-63924800	Active TSS	Primary hematopoietic stem cells	blood
7	chr7:63923800-63924800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr7:63923800-63924800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:63923800-63924800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:63923800-63924800	Active TSS	Adipose Nuclei	Adipose
11	chr7:63923800-63924800	Active TSS	Brain Angular Gyrus	brain
12	chr7:63923800-63924800	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr7:63923800-63924800	Active TSS	Colon Smooth Muscle	Colon
14	chr7:63923800-63924800	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr7:63923800-63924800	Active TSS	Ovary	ovary
16	chr7:63923800-63924800	Active TSS	Right Atrium	heart
17	chr7:63923800-63924800	Active TSS	Right Ventricle	heart
18	chr7:63923800-63924800	Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr7:63923800-63924800	Active TSS	Stomach Smooth Muscle	stomach
20	chr7:63923800-63925000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:63923800-63925000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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