Variant report

Variant	rs7806947
Chromosome Location	chr7:84648137-84648138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10264466	0.83[AMR][1000 genomes]
rs28756736	0.83[AMR][1000 genomes]
rs57608741	0.83[AMR][1000 genomes]
rs60161761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73377841	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73377843	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73394641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7786549	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84634200-84654000	Weak transcription	Fetal Kidney	kidney
2	chr7:84643000-84654000	Weak transcription	HUVEC	blood vessel
3	chr7:84644600-84662600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:84646000-84649000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:84647400-84649800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:84647800-84649600	Strong transcription	Fetal Lung	lung
7	chr7:84647800-84649800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:84648000-84648200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr7:84648000-84648200	Enhancers	A549	lung
10	chr7:84648000-84649800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:84648000-84649800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:84648000-84649800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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