Variant report

Variant	rs7807695
Chromosome Location	chr7:21869525-21869526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10225993	0.87[AFR][1000 genomes]
rs11972036	0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs11972218	0.94[AFR][1000 genomes]
rs11973100	0.96[YRI][hapmap];0.98[AFR][1000 genomes]
rs17145720	1.00[ASN][1000 genomes]
rs6461606	0.91[YRI][hapmap];0.98[AFR][1000 genomes]
rs6960272	0.84[AFR][1000 genomes]
rs6960352	1.00[ASW][hapmap];0.89[MKK][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes]
rs6960422	0.84[AFR][1000 genomes]
rs73277785	0.82[AFR][1000 genomes]
rs73277786	0.87[AFR][1000 genomes]
rs7799414	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv933320	chr7:21840543-21882825	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2761158	chr7:21863894-21877962	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21860400-21882200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:21868000-21870600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:21868200-21869800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:21868600-21869600	Enhancers	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links