Variant report

Variant	rs7808112
Chromosome Location	chr7:33231331-33231332
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10486519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11979709	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12671333	1.00[CEU][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs56014420	0.80[ASN][1000 genomes]
rs58863926	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73095320	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73095390	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv830942	chr7:33048075-33246735	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33206600-33232600	Weak transcription	Pancreas	Pancrea
2	chr7:33206600-33234800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:33217000-33239200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:33217800-33252400	Weak transcription	Aorta	Aorta
5	chr7:33218200-33235000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:33218200-33252200	Weak transcription	Left Ventricle	heart
7	chr7:33220600-33237000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:33221000-33236200	Weak transcription	Brain Anterior Caudate	brain
9	chr7:33221000-33236400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:33226400-33233200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:33226400-33234400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:33230000-33231400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr7:33230000-33231400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr7:33230000-33231400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr7:33230200-33231600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:33230200-33233400	Enhancers	Primary B cells from peripheral blood	blood
17	chr7:33230200-33234600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr7:33230400-33231400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:33230600-33231400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr7:33230600-33231400	Flanking Active TSS	Liver	Liver
21	chr7:33230600-33231400	Enhancers	Hela-S3	cervix
22	chr7:33230600-33231400	Flanking Active TSS	HepG2	liver
23	chr7:33230800-33234600	Weak transcription	NHDF-Ad	bronchial
24	chr7:33230800-33237000	Weak transcription	Primary T cells from cord blood	blood
25	chr7:33230800-33248000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:33231000-33231400	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr7:33231000-33231400	Flanking Active TSS	GM12878-XiMat	blood
28	chr7:33231000-33231800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:33231200-33231400	Enhancers	H1 Cell Line	embryonic stem cell
30	chr7:33231200-33231400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr7:33231200-33231400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:33231200-33233600	Weak transcription	Esophagus	oesophagus
33	chr7:33231200-33234000	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr7:33231200-33238200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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