Variant report

Variant	rs7808374
Chromosome Location	chr7:25604366-25604367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11983619	0.85[JPT][hapmap]
rs2999577	0.88[CEU][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
4	nsv522815	chr7:25599858-25606120	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv523322	chr7:25601480-25606120	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7808374	TAX1BP1	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25598600-25604400	Weak transcription	Fetal Kidney	kidney
2	chr7:25600800-25605200	Enhancers	Brain Germinal Matrix	brain
3	chr7:25602400-25604400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:25602800-25604400	Weak transcription	Fetal Muscle Leg	muscle
5	chr7:25602800-25604400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:25602800-25604400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr7:25603000-25604400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr7:25603000-25604600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr7:25603600-25605200	Weak transcription	Fetal Brain Male	brain
10	chr7:25603800-25605000	Enhancers	Psoas Muscle	Psoas
11	chr7:25604000-25604400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:25604000-25605200	Enhancers	Fetal Stomach	stomach
13	chr7:25604000-25605400	Enhancers	Fetal Brain Female	brain
14	chr7:25604000-25606000	Enhancers	Colon Smooth Muscle	Colon
15	chr7:25604000-25606200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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