Variant report

Variant	rs7808739
Chromosome Location	chr7:71019957-71019958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10259994	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34860529	0.84[ASN][1000 genomes]
rs35601662	0.84[ASN][1000 genomes]
rs4128374	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4717602	0.94[ASN][1000 genomes]
rs4719143	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4719144	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4719147	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4719148	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6460666	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6460668	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6460669	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6460672	0.83[ASN][1000 genomes]
rs6973852	0.94[ASN][1000 genomes]
rs7790450	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7793440	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7804648	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9692605	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70988000-71023800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:71004000-71023600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:71007200-71023400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:71008800-71020000	Weak transcription	Fetal Brain Male	brain
5	chr7:71013600-71023400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:71016600-71024200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:71016800-71023200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:71017400-71024400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:71019800-71024200	Weak transcription	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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