Variant report

Variant	rs7808818
Chromosome Location	chr7:70954231-70954232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10950260	0.80[AFR][1000 genomes]
rs11771035	0.83[ASW][hapmap];0.92[LWK][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs12176602	0.84[AFR][1000 genomes]
rs13235213	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35375166	0.81[AFR][1000 genomes]
rs4236247	0.92[LWK][hapmap];0.84[YRI][hapmap]
rs4236250	0.81[AFR][1000 genomes]
rs4404817	0.87[AFR][1000 genomes]
rs4585627	0.81[LWK][hapmap];0.89[YRI][hapmap]
rs4605942	0.80[CHD][hapmap]
rs4717596	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs4717598	0.88[AFR][1000 genomes]
rs4719123	0.86[AFR][1000 genomes]
rs4719124	0.88[AFR][1000 genomes]
rs4719128	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6460655	0.81[YRI][hapmap]
rs6460656	0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs7798395	1.00[JPT][hapmap]
rs7808036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70944000-70962200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:70944200-70962200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:70945400-70962000	Weak transcription	Fetal Stomach	stomach
4	chr7:70946800-70972600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:70947800-70972600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:70948200-70962200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:70951400-70955000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:70951600-70960800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:70952200-70961200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:70953000-70956200	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:70953400-70962000	Weak transcription	Ovary	ovary
12	chr7:70953600-70962200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:70954000-70954600	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:70954000-70954800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:70954000-70954800	Strong transcription	Fetal Muscle Trunk	muscle
16	chr7:70954000-70955000	Strong transcription	H9 Cell Line	embryonic stem cell
17	chr7:70954200-70955000	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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