Variant report

Variant	rs7808834
Chromosome Location	chr7:65708531-65708532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:65705536..65707290-chr7:65707942..65710882,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10247526	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10807701	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10807702	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10950032	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12530490	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12667373	0.84[AMR][1000 genomes]
rs13235972	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1392104	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1499613	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1499614	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1532573	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1546059	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1553174	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1873494	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1979823	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2243480	0.80[AMR][1000 genomes]
rs2420170	0.87[AMR][1000 genomes]
rs2420171	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2420172	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2460422	0.80[AMR][1000 genomes]
rs2460425	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2460426	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2460431	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2465120	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs316304	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs316317	0.80[AMR][1000 genomes]
rs316318	0.80[AMR][1000 genomes]
rs316321	0.80[AMR][1000 genomes]
rs316322	0.80[AMR][1000 genomes]
rs316325	0.80[AMR][1000 genomes]
rs316326	0.80[AMR][1000 genomes]
rs316327	0.80[AMR][1000 genomes]
rs316329	0.80[AMR][1000 genomes]
rs316331	0.80[AMR][1000 genomes]
rs316334	0.80[AMR][1000 genomes]
rs34192067	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34700450	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs387676	0.80[AMR][1000 genomes]
rs4145008	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4149468	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs419603	0.80[AMR][1000 genomes]
rs4236207	0.91[AMR][1000 genomes]
rs431076	0.80[AMR][1000 genomes]
rs4481472	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4718309	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4718315	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718316	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718317	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718333	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6460274	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6460277	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6460285	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6958289	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6958420	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6959002	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6964245	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6964530	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6966322	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6974723	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7778911	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs778679	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778683	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778687	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778691	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778693	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778701	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778704	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778717	0.84[ASN][1000 genomes]
rs778718	0.82[AMR][1000 genomes]
rs7787230	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778729	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778732	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs778733	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7792391	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7804223	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs958550	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9769882	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1028692	chr7:65673136-65751069	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538908	chr7:65673136-65751069	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7808834	VKORC1L1	cis	Whole Blood	GTEx
rs7808834	ASL	Cis_1M	lymphoblastoid	RTeQTL
rs7808834	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx
rs7808834	GUSB	cis	Whole Blood	GTEx
rs7808834	RP4-756H11.3	cis	lung	GTEx
rs7808834	VKORC1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65672200-65723400	Weak transcription	Right Atrium	heart
2	chr7:65676000-65716800	Weak transcription	Primary B cells from cord blood	blood
3	chr7:65686800-65715400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:65689600-65715800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:65695800-65709400	Weak transcription	Psoas Muscle	Psoas
6	chr7:65699000-65712400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:65701600-65729200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:65702200-65711200	Weak transcription	Brain Anterior Caudate	brain
9	chr7:65702400-65723600	Weak transcription	Gastric	stomach
10	chr7:65703000-65715800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:65703800-65716600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:65704000-65712800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:65704000-65726800	Weak transcription	HSMM	muscle
14	chr7:65704200-65709600	Weak transcription	A549	lung
15	chr7:65704200-65711400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:65704200-65711600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:65704200-65715200	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:65704200-65729200	Weak transcription	Aorta	Aorta
19	chr7:65704200-65731200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:65704400-65709400	Weak transcription	Stomach Mucosa	stomach
21	chr7:65704400-65710200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:65704400-65720200	Weak transcription	HSMMtube	muscle
23	chr7:65704400-65721800	Weak transcription	Fetal Intestine Small	intestine
24	chr7:65704400-65746800	Weak transcription	Pancreas	Pancrea
25	chr7:65704600-65709000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:65704600-65709600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr7:65704600-65710400	Weak transcription	Fetal Lung	lung
28	chr7:65704600-65716200	Weak transcription	Fetal Intestine Large	intestine
29	chr7:65704800-65720200	Weak transcription	NHLF	lung
30	chr7:65705200-65709600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:65705800-65709000	Weak transcription	Ovary	ovary
32	chr7:65705800-65711200	Weak transcription	Lung	lung
33	chr7:65705800-65712400	Weak transcription	HMEC	breast
34	chr7:65705800-65716400	Weak transcription	Esophagus	oesophagus
35	chr7:65705800-65729200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:65706000-65711000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:65706000-65712000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:65706000-65712200	Weak transcription	HepG2	liver
39	chr7:65706000-65716800	Weak transcription	Fetal Stomach	stomach
40	chr7:65706000-65720200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr7:65706200-65712200	Weak transcription	Left Ventricle	heart
42	chr7:65706200-65715200	Weak transcription	NHEK	skin
43	chr7:65706200-65720200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr7:65706400-65712000	Weak transcription	Osteobl	bone
45	chr7:65706400-65712600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:65706400-65715400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr7:65706400-65720200	Weak transcription	NHDF-Ad	bronchial
48	chr7:65706800-65712000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:65706800-65712600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:65706800-65714200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links