Variant report

Variant	rs7809362
Chromosome Location	chr7:50878601-50878602
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:50871845..50874817-chr7:50875745..50879437,4	K562	blood:
2	chr7:50871702..50877062-chr7:50877146..50881171,7	K562	blood:
3	chr7:50875562..50877095-chr7:50877461..50880211,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10239980	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10272063	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10278363	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12665949	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12718928	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051893	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2051894	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051897	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2301925	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4947861	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4947873	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4947888	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6593182	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7783789	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794164	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7808929	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv824091	chr7:50828682-50885984	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50862200-50889000	Weak transcription	Right Atrium	heart
2	chr7:50868000-50880000	Weak transcription	Left Ventricle	heart
3	chr7:50871400-50879600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:50871600-50879800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:50873800-50879400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:50874000-50879000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:50874000-50879800	Weak transcription	A549	lung
8	chr7:50874400-50879800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:50875200-50880200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:50875600-50880400	Weak transcription	Osteobl	bone
11	chr7:50876000-50879400	Weak transcription	Hela-S3	cervix
12	chr7:50876400-50880400	Weak transcription	Esophagus	oesophagus
13	chr7:50876400-50880600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:50876600-50879800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:50877000-50880400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:50877000-50880400	Weak transcription	HMEC	breast
17	chr7:50877800-50879800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:50878000-50879400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:50878600-50878800	Enhancers	Pancreas	Pancrea
20	chr7:50878600-50880000	Weak transcription	Spleen	Spleen

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