Variant report

Variant	rs7809363
Chromosome Location	chr7:152457803-152457804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:151814006..151817004-chr7:152456983..152459909,2	K562	blood:
2	chr7:152443156..152446125-chr7:152457371..152459756,3	K562	blood:
3	chr7:152159214..152163397-chr7:152455316..152459065,6	MCF-7	breast:
4	chr7:152159418..152164481-chr7:152455770..152458995,5	K562	blood:
5	chr7:152372618..152374953-chr7:152456032..152458958,3	MCF-7	breast:
6	chr7:152131214..152133795-chr7:152457561..152460908,3	K562	blood:
7	chr3:149375109..149376106-chr7:152457730..152458255,2	Hela-S3	cervix:
8	chr7:152442786..152449495-chr7:152455161..152460241,10	K562	blood:
9	chr7:152350020..152352895-chr7:152457250..152459622,2	K562	blood:
10	chr7:151289994..151291527-chr7:152457246..152459829,2	K562	blood:
11	chr7:152457650..152460498-chr7:152461318..152464362,6	K562	blood:
12	chr7:152272316..152275315-chr7:152457417..152459478,2	K562	blood:
13	chr7:152371235..152373485-chr7:152456876..152459275,3	K562	blood:
14	chr7:152453911..152455886-chr7:152456348..152457973,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000196584	Chromatin interaction
ENSG00000244328	Chromatin interaction
ENSG00000055609	Chromatin interaction
ENSG00000261455	Chromatin interaction
ENSG00000214003	Chromatin interaction
ENSG00000241313	Chromatin interaction
ENSG00000018408	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10952371	1.00[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11768867	0.81[EUR][1000 genomes]
rs2462114	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966527	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4281042	1.00[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4317489	0.97[EUR][1000 genomes]
rs4458776	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4469372	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4509231	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57937617	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58020309	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62494304	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6953833	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6959396	0.96[EUR][1000 genomes]
rs6976679	0.81[EUR][1000 genomes]
rs7793141	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7804896	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949483	chr7:151791158-152499822	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1021495	chr7:152032655-152458249	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv539207	chr7:152032655-152458249	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv1033496	chr7:152125903-152615617	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv539208	chr7:152125903-152615617	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	nsv1027100	chr7:152294734-152935140	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv831193	chr7:152353544-152592678	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv532221	chr7:152371297-152884547	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv868873	chr7:152371297-152900113	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7809363	ABP1	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:152456000-152458000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:152456200-152458000	Active TSS	H1 Cell Line	embryonic stem cell
3	chr7:152456200-152458000	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr7:152456200-152458000	Active TSS	Fetal Brain Female	brain
5	chr7:152456200-152458200	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr7:152456200-152458200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:152456200-152458200	Active TSS	Fetal Kidney	kidney
8	chr7:152456400-152458000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:152456400-152458000	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr7:152456400-152458000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:152456400-152458000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:152456400-152458000	Active TSS	Fetal Muscle Trunk	muscle
13	chr7:152456400-152458000	Active TSS	Right Ventricle	heart
14	chr7:152456400-152458000	Active TSS	HepG2	liver
15	chr7:152456400-152458200	Active TSS	H9 Cell Line	embryonic stem cell
16	chr7:152456400-152458200	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr7:152456400-152458200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:152456400-152458200	Active TSS	Fetal Brain Male	brain
19	chr7:152456400-152458400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:152456400-152458400	Active TSS	Ovary	ovary
21	chr7:152456600-152458000	Active TSS	NHLF	lung
22	chr7:152456800-152458000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:152456800-152458000	Active TSS	Rectal Smooth Muscle	rectum
24	chr7:152457000-152458200	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr7:152457000-152458400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr7:152457000-152458400	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr7:152457200-152458400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:152457400-152458000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
29	chr7:152457400-152458000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
30	chr7:152457400-152458000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr7:152457400-152458000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr7:152457400-152458000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr7:152457400-152458000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr7:152457400-152458000	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr7:152457400-152458000	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr7:152457400-152458000	Flanking Active TSS	Fetal Heart	heart
37	chr7:152457400-152458000	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr7:152457400-152458000	Flanking Active TSS	Fetal Thymus	thymus
39	chr7:152457400-152458000	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr7:152457400-152458200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr7:152457400-152458200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr7:152457400-152458200	Flanking Active TSS	Liver	Liver
43	chr7:152457400-152458200	Flanking Active TSS	Fetal Lung	lung
44	chr7:152457400-152458200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
45	chr7:152457400-152458400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr7:152457400-152458400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr7:152457400-152458400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:152457400-152458400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr7:152457400-152458400	Flanking Active TSS	Dnd41	blood
50	chr7:152457400-152458400	Flanking Active TSS	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links