Variant report

Variant	rs7809747
Chromosome Location	chr7:99515982-99515983
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99515720..99519605-chr7:99715122..99717935,4	K562	blood:
2	chr7:99514062..99516474-chr7:99604675..99606310,2	MCF-7	breast:
3	chr7:99212916..99215725-chr7:99515559..99517479,2	K562	blood:
4	chr7:99215348..99218327-chr7:99515747..99519754,4	MCF-7	breast:
5	chr7:99515562..99518077-chr7:99677870..99680297,2	MCF-7	breast:
6	chr7:99213490..99215740-chr7:99515671..99517972,2	K562	blood:
7	chr7:99514836..99517773-chr7:99723238..99724823,2	K562	blood:
8	chr7:99505834..99508326-chr7:99515358..99517138,2	K562	blood:
9	chr7:99515746..99518740-chr7:100026570..100028641,2	MCF-7	breast:
10	chr7:99154460..99156596-chr7:99515467..99517004,2	K562	blood:
11	chr7:99515716..99518824-chr7:99610446..99615072,4	K562	blood:
12	chr7:99515753..99518653-chr7:100025054..100026663,2	K562	blood:
13	chr7:99465689..99467966-chr7:99515431..99519422,3	K562	blood:
14	chr7:99515767..99517509-chr7:99677745..99680762,3	K562	blood:
15	chr7:99097453..99099549-chr7:99515518..99518074,2	MCF-7	breast:
16	chr7:99513908..99516258-chr7:99668490..99670311,2	K562	blood:
17	chr7:99415648..99420194-chr7:99515880..99518686,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000221909	Chromatin interaction
ENSG00000261511	Chromatin interaction
ENSG00000160908	Chromatin interaction
ENSG00000242798	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000106261	Chromatin interaction
ENSG00000106290	Chromatin interaction
ENSG00000260445	Chromatin interaction
ENSG00000214309	Chromatin interaction
ENSG00000166997	Chromatin interaction
ENSG00000146833	Chromatin interaction
ENSG00000166526	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000197343	Chromatin interaction
ENSG00000197037	Chromatin interaction
ENSG00000272647	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1025576	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1048705	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10808114	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1121592	0.97[ASN][1000 genomes]
rs13310903	0.82[ASN][1000 genomes]
rs1865472	0.97[ASN][1000 genomes]
rs2060452	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2082744	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2082745	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2247761	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2247762	0.96[ASN][1000 genomes]
rs2525542	0.81[EUR][1000 genomes]
rs2527899	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2527900	0.97[ASN][1000 genomes]
rs2527901	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2527902	0.97[ASN][1000 genomes]
rs2527903	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2527904	0.97[ASN][1000 genomes]
rs2527906	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2527908	0.97[ASN][1000 genomes]
rs2527909	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2527911	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2527912	0.96[ASN][1000 genomes]
rs2527913	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2527914	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2527915	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2527916	0.97[ASN][1000 genomes]
rs2527918	0.96[ASN][1000 genomes]
rs2527919	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2527920	0.96[ASN][1000 genomes]
rs2527921	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2527922	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2527925	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2527926	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2527927	0.91[ASN][1000 genomes]
rs2571991	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2571992	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2571993	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2571994	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2571995	0.97[ASN][1000 genomes]
rs2571996	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2571997	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2571998	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2571999	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2572000	0.96[ASN][1000 genomes]
rs2572002	0.91[ASN][1000 genomes]
rs2572003	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2572005	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2572006	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2572008	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2572009	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2572010	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2572011	0.94[ASN][1000 genomes]
rs2572012	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2572013	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2572015	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2572018	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2572019	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2572022	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4727439	0.96[ASN][1000 genomes]
rs474229	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs503115	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7781442	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	nsv534298	chr7:99478011-99886076	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1132 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs7809747	TRIM4	cis	Whole Blood	GTEx
rs7809747	PILRB	Cis_1M	lymphoblastoid	RTeQTL
rs7809747	TRIM4	cis	lung	GTEx
rs7809747	TRIM4	cis	Stomach	GTEx
rs7809747	TRIM4	Cis_1M	lymphoblastoid	RTeQTL
rs7809747	TRIM4	cis	Artery Aorta	GTEx
rs7809747	TRIM4	cis	Muscle Skeletal	GTEx
rs7809747	TRIM4	cis	Adipose Subcutaneous	GTEx
rs7809747	TRIM4	cis	Esophagus Mucosa	GTEx
rs7809747	TRIM4	cis	Skin Sun Exposed Lower leg	GTEx
rs7809747	TRIM4	cis	Thyroid	GTEx
rs7809747	TRIM4	cis	Esophagus Muscularis	GTEx
rs7809747	TRIM4	cis	Artery Tibial	GTEx
rs7809747	TRIM4	cis	Nerve Tibial	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99492600-99516600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:99503000-99516400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:99507200-99516000	Weak transcription	Esophagus	oesophagus
4	chr7:99507200-99516400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:99507200-99516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:99514200-99516200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:99514600-99516000	Transcr. at gene 5' and 3'	Dnd41	blood
8	chr7:99514800-99516000	Enhancers	Primary hematopoietic stem cells	blood
9	chr7:99514800-99516000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr7:99514800-99516200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:99514800-99516400	Weak transcription	Pancreas	Pancrea
12	chr7:99515000-99516000	Weak transcription	Left Ventricle	heart
13	chr7:99515000-99516200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:99515000-99516200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:99515000-99516200	Enhancers	Placenta	Placenta
16	chr7:99515000-99516200	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr7:99515000-99517400	Active TSS	GM12878-XiMat	blood
18	chr7:99515000-99518000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:99515200-99516000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:99515200-99516000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:99515200-99516200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr7:99515200-99516200	Enhancers	Small Intestine	intestine
23	chr7:99515400-99516000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:99515400-99516000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:99515400-99516000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr7:99515400-99516000	Flanking Active TSS	Fetal Intestine Small	intestine
27	chr7:99515400-99516000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr7:99515400-99516000	Flanking Active TSS	Hela-S3	cervix
29	chr7:99515400-99516000	Flanking Active TSS	HepG2	liver
30	chr7:99515400-99516000	Flanking Active TSS	HMEC	breast
31	chr7:99515400-99516000	Flanking Active TSS	HSMM	muscle
32	chr7:99515400-99516200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr7:99515400-99516200	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr7:99515400-99516200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr7:99515400-99516200	Flanking Active TSS	Brain Germinal Matrix	brain
36	chr7:99515400-99516200	Flanking Active TSS	Colon Smooth Muscle	Colon
37	chr7:99515400-99516200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
38	chr7:99515400-99516200	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr7:99515400-99516200	Flanking Active TSS	Thymus	Thymus
40	chr7:99515400-99516400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr7:99515400-99516400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr7:99515400-99516400	Flanking Active TSS	Duodenum Mucosa	Duodenum
43	chr7:99515400-99516400	Enhancers	Spleen	Spleen
44	chr7:99515400-99516600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr7:99515400-99516600	Flanking Active TSS	Liver	Liver
46	chr7:99515400-99516600	Flanking Active TSS	Osteobl	bone
47	chr7:99515400-99516800	Flanking Active TSS	Fetal Brain Female	brain
48	chr7:99515600-99516000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr7:99515600-99516000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr7:99515600-99516000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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