Variant report

Variant	rs7810002
Chromosome Location	chr7:140309656-140309657
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr7:140309545-140309743	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr7:140309540-140309672	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr7:140309493-140309800	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
DENND2A	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs3748092	1.00[AMR][1000 genomes]
rs6464117	1.00[AMR][1000 genomes]
rs6464879	1.00[AMR][1000 genomes]
rs6944394	1.00[AMR][1000 genomes]
rs6949464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950159	1.00[AMR][1000 genomes]
rs6952069	1.00[AMR][1000 genomes]
rs6959000	1.00[AMR][1000 genomes]
rs6971171	1.00[AMR][1000 genomes]
rs6977514	1.00[AMR][1000 genomes]
rs71645969	1.00[AMR][1000 genomes]
rs71645975	1.00[AMR][1000 genomes]
rs71645997	1.00[AMR][1000 genomes]
rs7806874	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9691722	1.00[AMR][1000 genomes]
rs9691914	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1021133	chr7:140270797-140338653	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029128	chr7:140293389-140335570	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140267800-140326000	Weak transcription	Gastric	stomach
2	chr7:140287600-140326000	Weak transcription	Fetal Brain Male	brain
3	chr7:140296000-140326000	Weak transcription	Fetal Heart	heart
4	chr7:140297600-140313600	Weak transcription	Fetal Kidney	kidney
5	chr7:140302200-140326200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:140302400-140326200	Weak transcription	Fetal Brain Female	brain
7	chr7:140302800-140326000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:140303800-140310800	Enhancers	NHDF-Ad	bronchial
9	chr7:140304200-140312200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:140305400-140310600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:140305400-140311200	Genic enhancers	Fetal Muscle Leg	muscle
12	chr7:140305600-140314200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:140307600-140326000	Weak transcription	Spleen	Spleen
14	chr7:140307800-140309800	Weak transcription	Placenta	Placenta
15	chr7:140307800-140310400	Weak transcription	Right Atrium	heart
16	chr7:140307800-140310600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:140307800-140310600	Weak transcription	Left Ventricle	heart
18	chr7:140307800-140311400	Weak transcription	HSMMtube	muscle
19	chr7:140307800-140316800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr7:140307800-140320400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:140308000-140310400	Weak transcription	Fetal Lung	lung
22	chr7:140308000-140310400	Weak transcription	Ovary	ovary
23	chr7:140308000-140311400	Weak transcription	HMEC	breast
24	chr7:140308000-140311800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:140308000-140320400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr7:140308200-140309800	Weak transcription	HSMM	muscle
27	chr7:140308200-140309800	Weak transcription	Osteobl	bone
28	chr7:140308200-140310400	Weak transcription	Right Ventricle	heart
29	chr7:140308200-140310600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:140308400-140324000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr7:140308800-140309800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:140308800-140309800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr7:140308800-140310000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr7:140308800-140310600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:140308800-140310600	Weak transcription	Lung	lung
36	chr7:140308800-140311000	Weak transcription	Fetal Stomach	stomach
37	chr7:140308800-140314400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr7:140308800-140322800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:140308800-140323800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr7:140309000-140310400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:140309000-140313600	Weak transcription	Brain Germinal Matrix	brain
42	chr7:140309200-140310600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr7:140309400-140309800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:140309400-140310000	Enhancers	NHEK	skin
45	chr7:140309400-140310800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:140309400-140310800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr7:140309400-140311000	Enhancers	Adipose Nuclei	Adipose
48	chr7:140309400-140311600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr7:140309400-140312200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr7:140309600-140309800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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