Variant report

Variant	rs7810525
Chromosome Location	chr7:26394876-26394877
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26229188..26231579-chr7:26391881..26395194,3	MCF-7	breast:
2	chr7:26388712..26391203-chr7:26393919..26396186,2	MCF-7	breast:
3	chr7:25900989..25903469-chr7:26394737..26397654,2	K562	blood:

Variant related genes	Relation type
ENSG00000122566	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1534795	0.86[ASN][1000 genomes]
rs1534796	0.86[ASN][1000 genomes]
rs4263654	0.80[ASN][1000 genomes]
rs55648465	0.80[ASN][1000 genomes]
rs56267539	0.80[ASN][1000 genomes]
rs6461927	0.80[ASN][1000 genomes]
rs6461928	0.80[ASN][1000 genomes]
rs6461931	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6461932	0.86[ASN][1000 genomes]
rs67907856	0.80[ASN][1000 genomes]
rs6959811	0.86[ASN][1000 genomes]
rs6967109	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73068425	0.80[ASN][1000 genomes]
rs73068471	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068476	0.91[ASN][1000 genomes]
rs73068484	0.86[ASN][1000 genomes]
rs73068486	0.86[ASN][1000 genomes]
rs7782538	0.86[ASN][1000 genomes]
rs7788587	0.80[ASN][1000 genomes]
rs7788704	0.80[ASN][1000 genomes]
rs7788823	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26368800-26405000	Weak transcription	Placenta	Placenta
2	chr7:26372400-26405200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr7:26375000-26414000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:26384800-26409400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:26385600-26414200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:26386600-26405200	Weak transcription	Thymus	Thymus
7	chr7:26386800-26395600	Weak transcription	Fetal Lung	lung
8	chr7:26387400-26409400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:26387800-26409400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr7:26388000-26409400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr7:26388200-26404600	Weak transcription	Dnd41	blood
12	chr7:26388200-26405000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr7:26388400-26397400	Weak transcription	Spleen	Spleen
14	chr7:26388600-26395400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr7:26388600-26396600	Weak transcription	Fetal Thymus	thymus
16	chr7:26388600-26397800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr7:26388800-26402600	Weak transcription	Liver	Liver
18	chr7:26388800-26405200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr7:26389000-26413200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:26389200-26395400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:26389800-26402600	Weak transcription	Pancreas	Pancrea
22	chr7:26390000-26398800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr7:26390000-26399000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:26390200-26395800	Weak transcription	Fetal Intestine Large	intestine
25	chr7:26390200-26405000	Weak transcription	Primary T cells from cord blood	blood
26	chr7:26390600-26398800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:26390600-26399000	Weak transcription	GM12878-XiMat	blood
28	chr7:26391200-26404600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr7:26391400-26396000	Weak transcription	Fetal Intestine Small	intestine
30	chr7:26392000-26404600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr7:26392200-26396800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr7:26392800-26398600	Weak transcription	Primary B cells from cord blood	blood
33	chr7:26393000-26397200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr7:26393000-26399200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:26393400-26400800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr7:26393600-26395400	Weak transcription	HepG2	liver
37	chr7:26393800-26397000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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