Variant report

Variant	rs7811163
Chromosome Location	chr7:64337501-64337502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr7:64337369-64338620	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ZNF273	TF binding region

Extended variants
information (count: 104 )
Associated
traits (count: 43 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10231738	0.82[EUR][1000 genomes]
rs10255860	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10258594	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10265252	0.81[EUR][1000 genomes]
rs10271473	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10429185	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10949955	0.81[CHB][hapmap]
rs11769995	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11773236	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12532791	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12668689	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12672910	0.82[EUR][1000 genomes]
rs13223080	0.82[EUR][1000 genomes]
rs13225933	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13233432	0.82[EUR][1000 genomes]
rs13233552	0.82[EUR][1000 genomes]
rs13236784	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13239272	0.82[EUR][1000 genomes]
rs13239921	0.82[EUR][1000 genomes]
rs1568909	0.81[EUR][1000 genomes]
rs1568910	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1568911	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1966140	0.82[AMR][1000 genomes]
rs2017252	0.83[CEU][hapmap]
rs2030811	0.82[EUR][1000 genomes]
rs2091224	0.81[CHB][hapmap]
rs34238742	0.82[AMR][1000 genomes]
rs35037176	0.82[EUR][1000 genomes]
rs35238187	0.82[EUR][1000 genomes]
rs35740030	0.82[EUR][1000 genomes]
rs3763507	0.82[CEU][hapmap]
rs3807068	0.81[CHB][hapmap]
rs3807069	0.81[CHB][hapmap]
rs3813700	0.81[AMR][1000 genomes]
rs3823471	0.82[CHB][hapmap]
rs3829003	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4502993	0.84[EUR][1000 genomes]
rs4717222	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4717226	0.80[CEU][hapmap]
rs4718149	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4718150	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4718151	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4718153	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs4718154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718156	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4718158	0.81[EUR][1000 genomes]
rs4718159	0.81[EUR][1000 genomes]
rs4718160	0.81[EUR][1000 genomes]
rs4718161	0.81[EUR][1000 genomes]
rs4718169	0.83[AMR][1000 genomes]
rs4718170	0.83[AMR][1000 genomes]
rs62458435	0.81[EUR][1000 genomes]
rs6460201	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6460202	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6460203	0.83[EUR][1000 genomes]
rs6460205	0.82[EUR][1000 genomes]
rs6460206	0.82[EUR][1000 genomes]
rs6460209	0.83[AMR][1000 genomes]
rs67268573	0.82[EUR][1000 genomes]
rs6942993	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6953002	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6956037	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs6957266	0.82[AMR][1000 genomes]
rs6957325	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs6960979	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6964268	0.83[EUR][1000 genomes]
rs6965861	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975625	0.83[EUR][1000 genomes]
rs6980403	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7776640	0.83[AMR][1000 genomes]
rs7777724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785355	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7796284	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7797115	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7804955	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7805817	0.81[AMR][1000 genomes]
rs7810293	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7810539	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs867630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs871076	0.82[EUR][1000 genomes]
rs871077	0.82[EUR][1000 genomes]
rs884476	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs940887	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9638209	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv1026390	chr7:64240323-64414364	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
10	nsv1033291	chr7:64273434-64406276	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
11	nsv508457	chr7:64286522-64391112	Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
12	esv1797468	chr7:64296309-64356050	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv888282	chr7:64299645-64511564	Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
14	nsv1018967	chr7:64318129-64380869	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	esv3506582	chr7:64323055-64563984	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv3506583	chr7:64323055-64563984	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	esv21367	chr7:64328624-64345129	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv1818246	chr7:64328632-64344038	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv1019180	chr7:64329889-64512842	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
20	nsv970860	chr7:64333925-64338698	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:43)

SNP	Gene	Cis/trans	Tissue	Source
rs7811163	RP11-460N20.5	cis	Whole Blood	GTEx
rs7811163	RP11-797H7.3	cis	Adipose Subcutaneous	GTEx
rs7811163	ZNF273	cis	lung	GTEx
rs7811163	SEPHS1P1	cis	Muscle Skeletal	GTEx
rs7811163	RP11-797H7.5	cis	Heart Left Ventricle	GTEx
rs7811163	RP11-460N20.5	cis	lung	GTEx
rs7811163	RP11-797H7.5	cis	lung	GTEx
rs7811163	RP11-797H7.3	cis	Nerve Tibial	GTEx
rs7811163	RP11-797H7.3	cis	Heart Left Ventricle	GTEx
rs7811163	SEPHS1P1	cis	Skin Sun Exposed Lower leg	GTEx
rs7811163	RP11-797H7.5	cis	Esophagus Muscularis	GTEx
rs7811163	RP11-797H7.5	cis	Adipose Subcutaneous	GTEx
rs7811163	RP11-460N20.5	cis	Artery Tibial	GTEx
rs7811163	RP11-460N20.4	cis	lung	GTEx
rs7811163	RP11-797H7.5	cis	Nerve Tibial	GTEx
rs7811163	ZNF273	cis	Thyroid	GTEx
rs7811163	RP11-797H7.3	cis	Artery Aorta	GTEx
rs7811163	RP11-797H7.3	cis	Thyroid	GTEx
rs7811163	RP11-797H7.3	cis	Esophagus Muscularis	GTEx
rs7811163	RP11-797H7.3	cis	Esophagus Mucosa	GTEx
rs7811163	RP11-460N20.4	cis	Adipose Subcutaneous	GTEx
rs7811163	RP11-460N20.5	cis	Thyroid	GTEx
rs7811163	AC104057.1	cis	Adipose Subcutaneous	GTEx
rs7811163	RP11-797H7.3	cis	lung	GTEx
rs7811163	ZNF273	cis	Heart Left Ventricle	GTEx
rs7811163	RP11-797H7.3	cis	Skin Sun Exposed Lower leg	GTEx
rs7811163	ERV3	cis	multi-tissue	Pritchard
rs7811163	RP11-797H7.5	cis	Artery Tibial	GTEx
rs7811163	INTS4L1	cis	Skin Sun Exposed Lower leg	GTEx
rs7811163	RP11-667F9.1	cis	Nerve Tibial	GTEx
rs7811163	RP11-797H7.3	cis	Whole Blood	GTEx
rs7811163	RP11-460N20.5	cis	Nerve Tibial	GTEx
rs7811163	ZNF107	cis	Muscle Skeletal	GTEx
rs7811163	SEPHS1P1	cis	Artery Tibial	GTEx
rs7811163	RP11-797H7.3	cis	Muscle Skeletal	GTEx
rs7811163	RP11-797H7.5	cis	Thyroid	GTEx
rs7811163	RP11-460N20.5	cis	Adipose Subcutaneous	GTEx
rs7811163	SEPHS1P1	cis	Esophagus Muscularis	GTEx
rs7811163	RP11-667F9.1	cis	Adipose Subcutaneous	GTEx
rs7811163	SEPHS1P1	cis	Nerve Tibial	GTEx
rs7811163	RP11-797H7.3	cis	Artery Tibial	GTEx
rs7811163	RP11-797H7.5	cis	Stomach	GTEx
rs7811163	SEPHS1P1	cis	Thyroid	GTEx

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64337200-64337600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr7:64337200-64338000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:64337200-64338600	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr7:64337400-64337600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr7:64337400-64337600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr7:64337400-64337600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:64337400-64337600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr7:64337400-64337600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr7:64337400-64337600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:64337400-64337600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:64337400-64337600	Enhancers	Adipose Nuclei	Adipose
12	chr7:64337400-64337600	Enhancers	Fetal Brain Male	brain
13	chr7:64337400-64337600	Enhancers	Fetal Heart	heart
14	chr7:64337400-64337600	Enhancers	Fetal Muscle Leg	muscle
15	chr7:64337400-64337600	Enhancers	Pancreas	Pancrea
16	chr7:64337400-64337600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
17	chr7:64337400-64337600	Active TSS	Stomach Smooth Muscle	stomach
18	chr7:64337400-64337800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:64337400-64337800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:64337400-64337800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr7:64337400-64337800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:64337400-64337800	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr7:64337400-64337800	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr7:64337400-64337800	Flanking Active TSS	Brain Substantia Nigra	brain
25	chr7:64337400-64337800	Flanking Active TSS	Colon Smooth Muscle	Colon
26	chr7:64337400-64337800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr7:64337400-64338000	Flanking Active TSS	Fetal Brain Female	brain
28	chr7:64337400-64338200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr7:64337400-64338400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
30	chr7:64337400-64338400	Active TSS	Brain Cingulate Gyrus	brain
31	chr7:64337400-64338400	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr7:64337400-64338600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:64337400-64338600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:64337400-64338800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:64337400-64338800	Active TSS	Brain Angular Gyrus	brain

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