Variant report

Variant	rs7811171
Chromosome Location	chr7:80870284-80870285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80860012..80862237-chr7:80868922..80870450,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10226419	1.00[ASN][1000 genomes]
rs10233336	1.00[ASN][1000 genomes]
rs10239348	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10240850	1.00[ASN][1000 genomes]
rs10240984	1.00[ASN][1000 genomes]
rs10251275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10253284	1.00[ASN][1000 genomes]
rs10256727	1.00[ASN][1000 genomes]
rs10256970	1.00[ASN][1000 genomes]
rs10264197	1.00[ASN][1000 genomes]
rs10269971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10271152	1.00[ASN][1000 genomes]
rs10271782	1.00[ASN][1000 genomes]
rs10275968	1.00[ASN][1000 genomes]
rs10277220	1.00[ASN][1000 genomes]
rs10279555	1.00[ASN][1000 genomes]
rs10280072	1.00[ASN][1000 genomes]
rs11971159	1.00[ASN][1000 genomes]
rs11971296	1.00[ASN][1000 genomes]
rs11972566	1.00[ASN][1000 genomes]
rs11983851	1.00[ASN][1000 genomes]
rs13347373	1.00[ASN][1000 genomes]
rs28544451	1.00[ASN][1000 genomes]
rs28748026	1.00[ASN][1000 genomes]
rs55781761	1.00[ASN][1000 genomes]
rs61259831	1.00[ASN][1000 genomes]
rs6978281	1.00[ASN][1000 genomes]
rs73382462	1.00[ASN][1000 genomes]
rs73382467	1.00[ASN][1000 genomes]
rs7787168	1.00[ASN][1000 genomes]
rs7789539	1.00[ASN][1000 genomes]
rs7789729	1.00[ASN][1000 genomes]
rs7791322	1.00[ASN][1000 genomes]
rs7791375	1.00[ASN][1000 genomes]
rs7799259	1.00[ASN][1000 genomes]
rs9656473	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888557	chr7:80813081-80917148	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1023149	chr7:80817550-80928090	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029034	chr7:80838012-81137146	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv831045	chr7:80841693-81012404	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv888558	chr7:80844667-80917148	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv607686	chr7:80857196-80917148	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv464608	chr7:80866153-80938045	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv607687	chr7:80866153-80938045	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80865200-80875200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:80869400-80871600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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