Variant report

Variant	rs7811540
Chromosome Location	chr7:108703150-108703151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11971233	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11971282	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11975647	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1513917	0.83[EUR][1000 genomes]
rs275543	0.85[EUR][1000 genomes]
rs275545	0.81[EUR][1000 genomes]
rs73190608	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7792565	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs916858	0.83[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7811540	FLJ36031	cis	cerebellum	SCAN
rs7811540	PNPLA8	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108702200-108703400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:108702200-108703400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:108702200-108703800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:108702600-108703200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:108702600-108703200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:108702800-108703200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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