Variant report

Variant	rs7812824
Chromosome Location	chr8:9929491-9929492
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17151069	0.87[YRI][hapmap]
rs2628145	0.83[AMR][1000 genomes]
rs56668047	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58730040	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6986358	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6986375	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs6989488	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6990444	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7012397	0.84[YRI][hapmap]
rs73526797	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73526799	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7834738	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv869934	chr8:9806639-9940586	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv890343	chr8:9888729-9932797	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1018236	chr8:9915428-9940481	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9913000-9933400	Weak transcription	Gastric	stomach
2	chr8:9913200-9933600	Weak transcription	Pancreas	Pancrea
3	chr8:9913200-9944800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:9913400-9930600	Weak transcription	Fetal Intestine Small	intestine
5	chr8:9913400-9935800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:9913600-9938600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr8:9914000-9929600	Weak transcription	Primary B cells from cord blood	blood
8	chr8:9914800-9947200	Weak transcription	Left Ventricle	heart
9	chr8:9920200-9938400	Weak transcription	Spleen	Spleen
10	chr8:9921400-9929800	Weak transcription	Primary T cells from cord blood	blood
11	chr8:9926400-9940400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:9926800-9930000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:9927800-9930800	Weak transcription	Liver	Liver
14	chr8:9928400-9933800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr8:9929200-9929600	ZNF genes & repeats	Aorta	Aorta
16	chr8:9929400-9929600	Enhancers	Psoas Muscle	Psoas
17	chr8:9929400-9929800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:9929400-9930200	Enhancers	H9 Cell Line	embryonic stem cell
19	chr8:9929400-9931400	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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