Variant report

Variant	rs7812828
Chromosome Location	chr8:60181245-60181246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28670669	0.88[AFR][1000 genomes]
rs6471770	0.88[AFR][1000 genomes]
rs6471771	0.88[AFR][1000 genomes]
rs6471772	0.88[AFR][1000 genomes]
rs73254116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7822365	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60177600-60194800	Weak transcription	Fetal Brain Male	brain
2	chr8:60179600-60187000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:60180800-60181600	Enhancers	Hela-S3	cervix
4	chr8:60181000-60181800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:60181000-60181800	Enhancers	Stomach Mucosa	stomach
6	chr8:60181000-60181800	Enhancers	HMEC	breast
7	chr8:60181000-60182000	Enhancers	Stomach Smooth Muscle	stomach
8	chr8:60181200-60181800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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