Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10087958	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs10453128	0.84[ASN][1000 genomes]
rs1589079	0.89[ASN][1000 genomes]
rs16916966	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16916968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2138297	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2176119	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6473666	0.89[ASN][1000 genomes]
rs6473675	0.92[CHB][hapmap]
rs6473676	0.92[CHB][hapmap]
rs6473677	0.92[CHB][hapmap]
rs6473678	0.92[CHB][hapmap]
rs6982212	0.92[CHB][hapmap]
rs7005809	0.93[CHB][hapmap]
rs7816834	0.83[ASN][1000 genomes]
rs7817558	0.84[ASN][1000 genomes]
rs7817892	0.84[ASN][1000 genomes]
rs7819892	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7820177	0.89[ASN][1000 genomes]
rs7833668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7834181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7838307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs877248	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9298469	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv3451013	chr8:52859964-52860228	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52831800-52863400	Weak transcription	Aorta	Aorta
2	chr8:52850000-52860400	Weak transcription	Right Ventricle	heart
3	chr8:52850200-52868000	Weak transcription	Primary B cells from cord blood	blood
4	chr8:52852000-52870000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:52852200-52866000	Weak transcription	Left Ventricle	heart
6	chr8:52852600-52861000	Weak transcription	Adipose Nuclei	Adipose
7	chr8:52852600-52862400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr8:52852600-52867600	Weak transcription	Fetal Kidney	kidney
9	chr8:52852800-52861000	Weak transcription	Fetal Stomach	stomach
10	chr8:52852800-52867000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:52856800-52865200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:52858200-52861000	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:52858400-52860600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:52859000-52860400	Enhancers	Pancreas	Pancrea
15	chr8:52859200-52860800	Enhancers	Fetal Thymus	thymus
16	chr8:52859600-52860400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:52859600-52863800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:52859800-52866600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr8:52860200-52861200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:52860200-52861200	Enhancers	Fetal Muscle Leg	muscle

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