Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10093541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102938	1.00[AMR][1000 genomes]
rs16922852	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923114	1.00[AMR][1000 genomes]
rs4567024	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56376843	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60011085	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471666	0.82[EUR][1000 genomes]
rs6471667	1.00[YRI][hapmap]
rs6471668	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471669	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986794	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987258	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987842	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994421	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002386	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248705	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248754	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250478	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820265	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611411	chr8:58835639-58878786	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58865200-58867000	Enhancers	Primary T cells from cord blood	blood
2	chr8:58865200-58867200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr8:58865400-58867000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr8:58865600-58866000	Enhancers	Primary T helper naive cells from peripheral blood	blood

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